Lineage for d1ncdl1 (1ncd L:1-108)

  1. Root: SCOP 1.73
  2. 651986Class b: All beta proteins [48724] (165 folds)
  3. 651987Fold b.1: Immunoglobulin-like beta-sandwich [48725] (27 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 651988Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 651989Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (29 proteins)
  6. 652980Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (14 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 653521Species Mouse (Mus musculus), cluster 4 [TaxId:10090] [88531] (181 PDB entries)
  8. 653664Domain d1ncdl1: 1ncd L:1-108 [19984]
    Other proteins in same PDB: d1ncdh1, d1ncdh2, d1ncdl2, d1ncdn_
    part of Fab NC41
    complexed with ca, man, nag

Details for d1ncdl1

PDB Entry: 1ncd (more details), 2.9 Å

PDB Description: refined crystal structure of the influenza virus n9 neuraminidase-nc41 fab complex
PDB Compounds: (L:) igg2a-kappa nc41 fab (light chain)

SCOP Domain Sequences for d1ncdl1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1ncdl1 b.1.1.1 (L:1-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}
divmtqspkfmstsvgdrvtitckasqdvstavvwyqqkpgqspklliywastrhigvpd
rfagsgsgtdytltissvqaedlalyycqqhysppwtfgggtkleikr

SCOP Domain Coordinates for d1ncdl1:

Click to download the PDB-style file with coordinates for d1ncdl1.
(The format of our PDB-style files is described here.)

Timeline for d1ncdl1: