Lineage for d1vfbb_ (1vfb B:)

  1. Root: SCOPe 2.08
  2. Class b: All beta proteins [48724] (180 folds)
  3. Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 proteins)
  6. Protein Immunoglobulin heavy chain variable domain, VH [88543] (22 species)
    VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. Species Mouse (Mus musculus), cluster 5 [TaxId:10090] [88555] (36 PDB entries)
  8. Domain d1vfbb_: 1vfb B: [19931]
    Other proteins in same PDB: d1vfba_, d1vfbc_
    part of Fv D1.3

Details for d1vfbb_

PDB Entry: 1vfb (more details), 1.8 Å

PDB Description: bound water molecules and conformational stabilization help mediate an antigen-antibody association
PDB Compounds: (B:) igg1-kappa d1.3 fv (heavy chain)

SCOPe Domain Sequences for d1vfbb_:

Sequence; same for both SEQRES and ATOM records: (download)

>d1vfbb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}
qvqlqesgpglvapsqslsitctvsgfsltgygvnwvrqppgkglewlgmiwgdgntdyn
salksrlsiskdnsksqvflkmnslhtddtaryycarerdyrldywgqgttltvss

SCOPe Domain Coordinates for d1vfbb_ are not available.

Timeline for d1vfbb_:

View in 3D
Domains from other chains:
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d1vfba_, d1vfbc_