SCOPe 2.04: Domain d3arfa1: 3arf A:7-185

Lineage for d3arfa1 (3arf A:7-185)

1. Root: SCOPe 2.04

2. Class d: Alpha and beta proteins (a+b) [53931] (380 folds)

3. Fold d.19: MHC antigen-recognition domain [54451] (1 superfamily)
   dimeric

4. Superfamily d.19.1: MHC antigen-recognition domain [54452] (2 families)

5. Family d.19.1.1: MHC antigen-recognition domain [54453] (13 proteins)

6. Protein CD1, alpha-1 and alpha-2 domains [54456] (5 species)
   Class I MHC-related

7. Species Mouse (Mus musculus) [TaxId:10090] [54457] (19 PDB entries)

8. Domain d3arfa1: 3arf A:7-185 [198918]
   Other proteins in same PDB: d3arfa2, d3arfb_, d3arfc1, d3arfc2, d3arfd1, d3arfd2
   automated match to d1gzpa2
   complexed with db3

Details for d3arfa1

PDB Entry: 3arf, 2.9 Å

PDB Description: ternary crystal structure of the mouse nkt tcr-cd1d-c20:2

PDB Compounds: (A:) Antigen-presenting glycoprotein CD1d1

SCOPe Domain Sequences for d3arfa1:

Sequence, based on SEQRES records:

>d3arfa1 d.19.1.1 (A:7-185) CD1, alpha-1 and alpha-2 domains {Mouse (Mus musculus) [TaxId: 10090]}
nytfrclqmssfanrswsrtdsvvwlgdlqthrwsndsatisftkpwsqgklsnqqwekl
qhmfqvyrvsftrdiqelvkmmspkedypieiqlsagcemypgnasesflhvafqgkyvv
rfwgtswqtvpgapswldlpikvlnadqgtsatvqmllndtcplfvrglleagksdlek

Sequence, based on observed residues (ATOM records):

>d3arfa1 d.19.1.1 (A:7-185) CD1, alpha-1 and alpha-2 domains {Mouse (Mus musculus) [TaxId: 10090]}
nytfrclqmssfanrswsrtdsvvwlgdlqthrwsndsatisftkpwsqgklsnqqwekl
qhmfqvyrvsftrdiqelvkmmspkedypieiqlsagcemygnasesflhvafqgkyvvr
fwgtswqtvpgapswldlpikvlnadqgtsatvqmllndtcplfvrglleagksdlek

Timeline for d3arfa1:

• d3arfa1 first appeared in SCOPe 2.03
  
• d3arfa1 appears in SCOPe 2.05
  
• d3arfa1 appears in the current release, SCOPe 2.08