Lineage for d1acyh1 (1acy H:1-112)

  1. Root: SCOP 1.65
  2. 287094Class b: All beta proteins [48724] (126 folds)
  3. 287095Fold b.1: Immunoglobulin-like beta-sandwich [48725] (20 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 287096Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 287097Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (21 proteins)
  6. 287195Protein Immunoglobulin heavy chain variable domain, VH [88543] (19 species)
    VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogeneous CDRs are listed as engineered species
  7. 287721Species Mouse (Mus musculus), cluster 7.3 [TaxId:10090] [88559] (2 PDB entries)
  8. 287723Domain d1acyh1: 1acy H:1-112 [19885]
    Other proteins in same PDB: d1acyh2, d1acyl1, d1acyl2
    part of Fab 59.1

Details for d1acyh1

PDB Entry: 1acy (more details), 3 Å

PDB Description: crystal structure of the principal neutralizing site of hiv-1
PDB Compounds: (H:)

SCOP Domain Sequences for d1acyh1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1acyh1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3}
qvklqesgpavikpsqslsltcivsgfsitrtnycwhwirqapgkglewmgricyegsiy
yspsiksrstisrdtslnkffiqlisvtnedtamyycsrenhmyetyfdvwgqgttvtvs

SCOP Domain Coordinates for d1acyh1:

Click to download the PDB-style file with coordinates for d1acyh1.
(The format of our PDB-style files is described here.)

Timeline for d1acyh1:

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Domains from same chain:
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d1acyh2