SCOPe 2.04: Domain d2yppb_: 2ypp B:

Lineage for d2yppb_ (2ypp B:)

1. Root: SCOPe 2.04

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.10: Aldolase [51569] (9 families)
   Common fold covers whole protein structure

5. Family c.1.10.8: Class-II DAHP synthetase [141840] (2 proteins)
   Pfam PF01474

6. Protein automated matches [191084] (2 species)
   not a true protein

7. Species Mycobacterium tuberculosis [TaxId:83332] [189029] (6 PDB entries)

8. Domain d2yppb_: 2ypp B: [198773]
   automated match to d3rzib_
   complexed with cl, gol, mn, so4, tyr

Details for d2yppb_

PDB Entry: 2ypp, 2.3 Å

PDB Description: 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase in complex with 3 tyrosine molecules

PDB Compounds: (B:) phospho-2-dehydro-3-deoxyheptonate aldolase arog

SCOPe Domain Sequences for d2yppb_:

Sequence, based on SEQRES records:

>d2yppb_ c.1.10.8 (B:) automated matches {Mycobacterium tuberculosis [TaxId: 83332]}
mnwtvdipidqlpslpplptdlrtrldaalakpaaqqptwpadqalamrtvlesvppvtv
pseivrlqeqlaqvakgeafllqggdcaetfmdntephirgnvrallqmavvltygasmp
vvkvariagqyakprsadidalglrsyrgdmingfapdaaarehdpsrlvrayanasaam
nlvraltssglaslhlvhdwnrefvrtspagaryealateidrglrfmsacgvadrnlqt
aeiyashealvldyeramlrlsdgddgepqlfdlsahtvwigertrqidgahiafaqvia
npvgvklgpnmtpelaveyverldphnkpgrltlvsrmgnhkvrdllppivekvqatghq
viwqcdpmhgnthesstgfktrhfdrivdevqgffevhralgthpggihveitgenvtec
lggaqdisetdlagryetacdprlntqqslelaflvaemlrd

Sequence, based on observed residues (ATOM records):

>d2yppb_ c.1.10.8 (B:) automated matches {Mycobacterium tuberculosis [TaxId: 83332]}
mnwtvdipipslpplptdlrtrldaalakpaaqqptwpadqalamrtvlesvppvtvpse
ivrlqeqlaqvakgeafllqggdcaetfmdntephirgnvrallqmavvltygasmpvvk
variagqyakprsadidalglrsyrgdmingfapdaaarehdpsrlvrayanasaamnlv
raltssglaslhlvhdwnrefvrtspagaryealateidrglrfmsacgvadrnlqtaei
yashealvldyeramlrlsdgddgepqlfdlsahtvwigertrqidgahiafaqvianpv
gvklgpnmtpelaveyverldphnkpgrltlvsrmgnhkvrdllppivekvqatghqviw
qcdpmhgnthesstgfktrhfdrivdevqgffevhralgthpggihveitgenvteclgg
aqdisetdlagryetacdprlntqqslelaflvaemlrd

Timeline for d2yppb_:

• d2yppb_ first appeared in SCOPe 2.03
  
• d2yppb_ appears in SCOPe 2.05
  
• d2yppb_ appears in the current release, SCOPe 2.08