Lineage for d2yimd_ (2yim D:)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2150853Fold c.123: CoA-transferase family III (CaiB/BaiF) [89795] (1 superfamily)
    consist of two different alpha/beta domains; N-terminal domain has a SurE-like topology with a left-handed beta-alpha-beta unit
  4. 2150854Superfamily c.123.1: CoA-transferase family III (CaiB/BaiF) [89796] (2 families) (S)
  5. 2150855Family c.123.1.1: CoA-transferase family III (CaiB/BaiF) [89797] (5 protein domains)
    forms interlocked homodimer of two ring-like subunits
  6. 2150856Protein 2-methylacyl-CoA racemase Mcr [142827] (1 species)
  7. 2150857Species Mycobacterium tuberculosis [TaxId:1773] [142828] (7 PDB entries)
    Uniprot O06543 2-360
  8. 2150860Domain d2yimd_: 2yim D: [198765]
    Other proteins in same PDB: d2yimc_
    automated match to d1x74a1
    complexed with gol, mc4, po4

Details for d2yimd_

PDB Entry: 2yim (more details), 1.41 Å

PDB Description: The enolisation chemistry of a thioester-dependent racemase: the 1.4 A crystal structure of a complex with a planar reaction intermediate analogue
PDB Compounds: (D:) probable alpha-methylacyl-coa racemase mcr (2-methylacyl-coa racemase) (2-arylpropionyl-coa epimerase )

SCOPe Domain Sequences for d2yimd_:

Sequence, based on SEQRES records: (download)

>d2yimd_ c.123.1.1 (D:) 2-methylacyl-CoA racemase Mcr {Mycobacterium tuberculosis [TaxId: 1773]}
agplsglrvvelagigpgphaamilgdlgadvvridrpssvdgisrdamlrnrrivtadl
ksdqglelalkliakadvliegyrpgvterlglgpeecakvndrliyarmtgwgqtgprs
qqaghdinyislngilhaigrgderpvpplnlvgdfgggsmfllvgilaalwerqssgkg
qvvdaamvdgssvliqmmwamratgmwtdtrganmldggapyydtyecadgryvavgaie
pqfyaamlaglgldaaelppqndrarwpelrallteafashdrdhwgavfansdacvtpv
lafgevhnephiierntfyeanggwqpmpaprfsrtassqprppaatidieavltdwdg

Sequence, based on observed residues (ATOM records): (download)

>d2yimd_ c.123.1.1 (D:) 2-methylacyl-CoA racemase Mcr {Mycobacterium tuberculosis [TaxId: 1773]}
agplsglrvvelagigpgphaamilgdlgadvvridrpsisrdamlrnrrivtadlksdq
glelalkliakadvliegyrpgvterlglgpeecakvndrliyarmtgwgqtgprsqqag
hdinyislngilhaigrgderpvpplnlvgdfgggsmfllvgilaalwerqssgkgqvvd
aamvdgssvliqmmwamratgmwtdtrganmldggapyydtyecadgryvavgaiepqfy
aamlaglgldaaelppqndrarwpelrallteafashdrdhwgavfansdacvtpvlafg
evhnephiierntfyeanggwqpmpaprfsrtassqprppaatidieavltdwdg

SCOPe Domain Coordinates for d2yimd_:

Click to download the PDB-style file with coordinates for d2yimd_.
(The format of our PDB-style files is described here.)

Timeline for d2yimd_: