SCOPe 2.08: Domain d2yimd_: 2yim D:

Lineage for d2yimd_ (2yim D:)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.123: CoA-transferase family III (CaiB/BaiF) [89795] (1 superfamily)
   consist of two different alpha/beta domains; N-terminal domain has a SurE-like topology with a left-handed beta-alpha-beta unit

4. Superfamily c.123.1: CoA-transferase family III (CaiB/BaiF) [89796] (2 families)

5. Family c.123.1.1: CoA-transferase family III (CaiB/BaiF) [89797] (5 proteins)
   forms interlocked homodimer of two ring-like subunits

6. Protein 2-methylacyl-CoA racemase Mcr [142827] (1 species)

7. Species Mycobacterium tuberculosis [TaxId:1773] [142828] (7 PDB entries)
   Uniprot O06543 2-360

8. Domain d2yimd_: 2yim D: [198765]
   Other proteins in same PDB: d2yimc_
   automated match to d1x74a1
   complexed with gol, mc4, po4

Details for d2yimd_

PDB Entry: 2yim, 1.41 Å

PDB Description: The enolisation chemistry of a thioester-dependent racemase: the 1.4 A crystal structure of a complex with a planar reaction intermediate analogue

PDB Compounds: (D:) probable alpha-methylacyl-coa racemase mcr (2-methylacyl-coa racemase) (2-arylpropionyl-coa epimerase )

SCOPe Domain Sequences for d2yimd_:

Sequence, based on SEQRES records:

>d2yimd_ c.123.1.1 (D:) 2-methylacyl-CoA racemase Mcr {Mycobacterium tuberculosis [TaxId: 1773]}
agplsglrvvelagigpgphaamilgdlgadvvridrpssvdgisrdamlrnrrivtadl
ksdqglelalkliakadvliegyrpgvterlglgpeecakvndrliyarmtgwgqtgprs
qqaghdinyislngilhaigrgderpvpplnlvgdfgggsmfllvgilaalwerqssgkg
qvvdaamvdgssvliqmmwamratgmwtdtrganmldggapyydtyecadgryvavgaie
pqfyaamlaglgldaaelppqndrarwpelrallteafashdrdhwgavfansdacvtpv
lafgevhnephiierntfyeanggwqpmpaprfsrtassqprppaatidieavltdwdg

Sequence, based on observed residues (ATOM records):

>d2yimd_ c.123.1.1 (D:) 2-methylacyl-CoA racemase Mcr {Mycobacterium tuberculosis [TaxId: 1773]}
agplsglrvvelagigpgphaamilgdlgadvvridrpsisrdamlrnrrivtadlksdq
glelalkliakadvliegyrpgvterlglgpeecakvndrliyarmtgwgqtgprsqqag
hdinyislngilhaigrgderpvpplnlvgdfgggsmfllvgilaalwerqssgkgqvvd
aamvdgssvliqmmwamratgmwtdtrganmldggapyydtyecadgryvavgaiepqfy
aamlaglgldaaelppqndrarwpelrallteafashdrdhwgavfansdacvtpvlafg
evhnephiierntfyeanggwqpmpaprfsrtassqprppaatidieavltdwdg

Timeline for d2yimd_:

• d2yimd_ first appeared in SCOPe 2.03
  
• d2yimd_ appears in SCOPe 2.07