SCOPe 2.06: Domain d2vdif2: 2vdi F:151-475

Lineage for d2vdif2 (2vdi F:151-475)

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.14: RuBisCo, C-terminal domain [51649] (2 families)
   automatically mapped to Pfam PF00016

5. Family c.1.14.1: RuBisCo, large subunit, C-terminal domain [51650] (2 proteins)
   N-terminal domain is alpha+beta

6. Protein automated matches [226984] (9 species)
   not a true protein

7. Species Green alga (Chlamydomonas reinhardtii) [TaxId:3055] [225548] (9 PDB entries)

8. Domain d2vdif2: 2vdi F:151-475 [198424]
   Other proteins in same PDB: d2vdia1, d2vdib1, d2vdic1, d2vdid1, d2vdie1, d2vdif1, d2vdig1, d2vdih1, d2vdii_, d2vdij_, d2vdik_, d2vdil_, d2vdim_, d2vdin_, d2vdio_, d2vdip_
   automated match to d1wdda1
   complexed with cap, edo, mg; mutant

Details for d2vdif2

PDB Entry: 2vdi, 2.65 Å

PDB Description: crystal structure of chlamydomonas reinhardtii rubisco with a large- subunit c192s mutation

PDB Compounds: (F:) ribulose bisphosphate carboxylase large chain

SCOPe Domain Sequences for d2vdif2:

Sequence; same for both SEQRES and ATOM records:

>d2vdif2 c.1.14.1 (F:151-475) automated matches {Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]}
pphgiqverdklnkygrgllgctikpklglsaknygravyeslrggldftkddenvnsqp
fmrwrdrflfvaeaiykaqaetgevkghylnatagtceemmkravcakelgvpiimhdyl
tggftantslaiycrdnglllhihramhavidrqrnhgihfrvlakalrmsggdhlhsgt
vvgklegerevtlgfvdlmrddyvekdrsrgiyftqdwcsmpgvmpvasggihvwhmpal
veifgddaclqfgggtlghpwgnapgaaanrvaleactqarnegrdlareggdvirsack
wspelaaacevwkeikfefdtidkl

Timeline for d2vdif2:

• d2vdif2 first appeared in SCOPe 2.03
  
• d2vdif2 appears in SCOPe 2.05
  
• d2vdif2 appears in SCOPe 2.07
  
• d2vdif2 appears in the current release, SCOPe 2.08