SCOPe 2.07: Domain d2vdib1: 2vdi B:8-150

Lineage for d2vdib1 (2vdi B:8-150)

1. Root: SCOPe 2.07

2. Class d: Alpha and beta proteins (a+b) [53931] (388 folds)

3. Fold d.58: Ferredoxin-like [54861] (59 superfamilies)
   alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2

4. Superfamily d.58.9: RuBisCO, large subunit, small (N-terminal) domain [54966] (2 families)
   C-terminal domain is beta/alpha barrel

5. Family d.58.9.0: automated matches [227234] (1 protein)
   not a true family

6. Protein automated matches [226983] (27 species)
   not a true protein

7. Species Green alga (Chlamydomonas reinhardtii) [TaxId:3055] [225547] (9 PDB entries)

8. Domain d2vdib1: 2vdi B:8-150 [198415]
   Other proteins in same PDB: d2vdia2, d2vdib2, d2vdic2, d2vdid2, d2vdie2, d2vdif2, d2vdig2, d2vdih2, d2vdii_, d2vdij_, d2vdik_, d2vdil_, d2vdim_, d2vdin_, d2vdio_, d2vdip_
   automated match to d1wdda2
   complexed with cap, edo, mg; mutant

Details for d2vdib1

PDB Entry: 2vdi, 2.65 Å

PDB Description: crystal structure of chlamydomonas reinhardtii rubisco with a large- subunit c192s mutation

PDB Compounds: (B:) ribulose bisphosphate carboxylase large chain

SCOPe Domain Sequences for d2vdib1:

Sequence; same for both SEQRES and ATOM records:

>d2vdib1 d.58.9.0 (B:8-150) automated matches {Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]}
kagagfkagvkdyrltyytpdyvvrdtdilaafrmtpqpgvppeecgaavaaesstgtwt
tvwtdgltsldrykgrcydiepvpgednqyiayvaypidlfeegsvtnmftsivgnvfgf
kalralrledlrippayvktfvg

Timeline for d2vdib1:

• d2vdib1 first appeared in SCOPe 2.03
  
• d2vdib1 appears in SCOPe 2.06
  
• d2vdib1 appears in the current release, SCOPe 2.08