SCOPe 2.08: Domain d2vdhb2: 2vdh B:151-475

Lineage for d2vdhb2 (2vdh B:151-475)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.14: RuBisCo, C-terminal domain [51649] (2 families)
   automatically mapped to Pfam PF00016

5. Family c.1.14.1: RuBisCo, large subunit, C-terminal domain [51650] (2 proteins)
   N-terminal domain is alpha+beta

6. Protein automated matches [226984] (16 species)
   not a true protein

7. Species Green alga (Chlamydomonas reinhardtii) [TaxId:3055] [225548] (9 PDB entries)

8. Domain d2vdhb2: 2vdh B:151-475 [198400]
   Other proteins in same PDB: d2vdha1, d2vdhb1, d2vdhc1, d2vdhd1, d2vdhe1, d2vdhf1, d2vdhg1, d2vdhh1, d2vdhi_, d2vdhj_, d2vdhk_, d2vdhl_, d2vdhm_, d2vdhn_, d2vdho_, d2vdhp_
   automated match to d1wdda1
   complexed with cap, edo, mg; mutant

Details for d2vdhb2

PDB Entry: 2vdh, 2.3 Å

PDB Description: crystal structure of chlamydomonas reinhardtii rubisco with a large-subunit c172s mutation

PDB Compounds: (B:) ribulose bisphosphate carboxylase large chain

SCOPe Domain Sequences for d2vdhb2:

Sequence; same for both SEQRES and ATOM records:

>d2vdhb2 c.1.14.1 (B:151-475) automated matches {Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]}
pphgiqverdklnkygrgllgstikpklglsaknygravyeclrggldftkddenvnsqp
fmrwrdrflfvaeaiykaqaetgevkghylnatagtceemmkravcakelgvpiimhdyl
tggftantslaiycrdnglllhihramhavidrqrnhgihfrvlakalrmsggdhlhsgt
vvgklegerevtlgfvdlmrddyvekdrsrgiyftqdwcsmpgvmpvasggihvwhmpal
veifgddaclqfgggtlghpwgnapgaaanrvaleactqarnegrdlareggdvirsack
wspelaaacevwkeikfefdtidkl

Timeline for d2vdhb2:

• d2vdhb2 first appeared in SCOPe 2.03
  
• d2vdhb2 appears in SCOPe 2.07