Lineage for d2gbxc2 (2gbx C:153-451)

  1. Root: SCOPe 2.07
  2. 2494617Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2538746Fold d.129: TBP-like [55944] (11 superfamilies)
    beta-alpha-beta(4)-alpha
  4. 2539012Superfamily d.129.3: Bet v1-like [55961] (11 families) (S)
    contains a single copy of this fold with a alpha-beta2 insertion after the first helix; there is a cavity between the beta-sheet and the long C-terminal helix
  5. 2539333Family d.129.3.0: automated matches [191339] (1 protein)
    not a true family
  6. 2539334Protein automated matches [190218] (22 species)
    not a true protein
  7. 2539527Species Sphingobium yanoikuyae [TaxId:13690] [225237] (2 PDB entries)
  8. 2539532Domain d2gbxc2: 2gbx C:153-451 [197947]
    Other proteins in same PDB: d2gbxa1, d2gbxb_, d2gbxc1, d2gbxd_, d2gbxe1, d2gbxf_
    automated match to d1eg9a2
    complexed with bnl, fe, fes, zn

Details for d2gbxc2

PDB Entry: 2gbx (more details), 2.8 Å

PDB Description: crystal structure of biphenyl 2,3-dioxygenase from sphingomonas yanoikuyae b1 bound to biphenyl
PDB Compounds: (C:) Biphenyl 2,3-Dioxygenase Alpha Subunit

SCOPe Domain Sequences for d2gbxc2:

Sequence; same for both SEQRES and ATOM records: (download)

>d2gbxc2 d.129.3.0 (C:153-451) automated matches {Sphingobium yanoikuyae [TaxId: 13690]}
eapsledylgefryyldtiwegagggmellgppmksllqcnwkvpaenfigdgyhvgwth
aaalsqiggelaglagnradipfddlglqfttrhghgfgvidnaaaglhikregwtkfle
dtrgevrrkfgpererlylghwncsifpncsflygtntfkiwhprgpheievwtytivpr
dadpatksmiqreairtfgtagtlesddgenmssatyinrgvitrngrmnstmgvgyegp
hpvypgivgisfigetsyrgfyrfwkemidapdwasvkanddtwdsvfpnrnfwnekln

SCOPe Domain Coordinates for d2gbxc2:

Click to download the PDB-style file with coordinates for d2gbxc2.
(The format of our PDB-style files is described here.)

Timeline for d2gbxc2: