Lineage for d1ymhc1 (1ymh C:1-107)

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2017115Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2017116Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2017117Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 protein domains)
  6. 2018294Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (16 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 2018687Species Mouse (Mus musculus), cluster 1.2 [TaxId:10090] [88525] (51 PDB entries)
  8. 2018744Domain d1ymhc1: 1ymh C:1-107 [197667]
    Other proteins in same PDB: d1ymha2, d1ymhb1, d1ymhb2, d1ymhc2, d1ymhd1, d1ymhd2, d1ymhe_, d1ymhf_
    automated match to d1nlbl1

Details for d1ymhc1

PDB Entry: 1ymh (more details), 2.6 Å

PDB Description: anti-HCV Fab 19D9D6 complexed with protein L (PpL) mutant A66W
PDB Compounds: (C:) Fab 16D9D6, light chain

SCOPe Domain Sequences for d1ymhc1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1ymhc1 b.1.1.1 (C:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

SCOPe Domain Coordinates for d1ymhc1:

Click to download the PDB-style file with coordinates for d1ymhc1.
(The format of our PDB-style files is described here.)

Timeline for d1ymhc1: