SCOPe 2.08: Domain d1upmr2: 1upm R:148-475

Lineage for d1upmr2 (1upm R:148-475)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.14: RuBisCo, C-terminal domain [51649] (2 families)
   automatically mapped to Pfam PF00016

5. Family c.1.14.1: RuBisCo, large subunit, C-terminal domain [51650] (2 proteins)
   N-terminal domain is alpha+beta

6. Protein Ribulose 1,5-bisphosphate carboxylase-oxygenase [51651] (14 species)

7. Species Spinach (Spinacia oleracea) [TaxId:3562] [51653] (11 PDB entries)

8. Domain d1upmr2: 1upm R:148-475 [197568]
   Other proteins in same PDB: d1upmb1, d1upmc_, d1upme1, d1upmf_, d1upmh1, d1upmi_, d1upmk1, d1upml1, d1upmm_, d1upmo1, d1upmp_, d1upmr1, d1upms_, d1upmt_, d1upmv1, d1upmw_
   automated match to d8ruca1
   complexed with ca, cap

Details for d1upmr2

PDB Entry: 1upm, 2.3 Å

PDB Description: activated spinach rubisco complexed with 2-carboxyarabinitol 2 bisphosphat and ca2+.

PDB Compounds: (R:) ribulose bisphosphate carboxylase large chain

SCOPe Domain Sequences for d1upmr2:

Sequence; same for both SEQRES and ATOM records:

>d1upmr2 c.1.14.1 (R:148-475) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Spinach (Spinacia oleracea) [TaxId: 3562]}
fqgpphgiqverdklnkygrpllgctikpklglsaknygravyeclrggldftkddenvn
sqpfmrwrdrflfcaealykaqaetgeikghylnatagtcedmmkravfarelgvpivmh
dyltggftanttlshycrdnglllhihramhavidrqknhgmhfrvlakalrlsggdhih
sgtvvgklegerditlgfvdllrddytekdrsrgiyftqswvstpgvlpvasggihvwhm
palteifgddsvlqfgggtlghpwgnapgavanrvaleacvqarnegrdlaregntiire
atkwspelaaacevwkeikfefpamdtv

Timeline for d1upmr2:

• d1upmr2 first appeared in SCOPe 2.03
  
• d1upmr2 appears in SCOPe 2.07