SCOPe 2.04: Domain d1upmr1: 1upm R:9-147

Lineage for d1upmr1 (1upm R:9-147)

1. Root: SCOPe 2.04

2. Class d: Alpha and beta proteins (a+b) [53931] (380 folds)

3. Fold d.58: Ferredoxin-like [54861] (59 superfamilies)
   alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2

4. Superfamily d.58.9: RuBisCO, large subunit, small (N-terminal) domain [54966] (2 families)
   C-terminal domain is beta/alpha barrel

5. Family d.58.9.1: Ribulose 1,5-bisphosphate carboxylase-oxygenase [54967] (1 protein)

6. Protein Ribulose 1,5-bisphosphate carboxylase-oxygenase [54968] (12 species)

7. Species Spinach (Spinacia oleracea) [TaxId:3562] [54970] (10 PDB entries)

8. Domain d1upmr1: 1upm R:9-147 [197567]
   Other proteins in same PDB: d1upmb2, d1upmc_, d1upme2, d1upmf_, d1upmh2, d1upmi_, d1upmk2, d1upml2, d1upmm_, d1upmo2, d1upmp_, d1upmr2, d1upms_, d1upmt_, d1upmv2, d1upmw_
   automated match to d8ruca2
   complexed with ca, cap

Details for d1upmr1

PDB Entry: 1upm, 2.3 Å

PDB Description: activated spinach rubisco complexed with 2-carboxyarabinitol 2 bisphosphat and ca2+.

PDB Compounds: (R:) ribulose bisphosphate carboxylase large chain

SCOPe Domain Sequences for d1upmr1:

Sequence; same for both SEQRES and ATOM records:

>d1upmr1 d.58.9.1 (R:9-147) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Spinach (Spinacia oleracea) [TaxId: 3562]}
asvefkagvkdykltyytpeyetldtdilaafrvspqpgvppeeagaavaaesstgtwtt
vwtdgltnldrykgrcyhiepvageenqyicyvaypldlfeegsvtnmftsivgnvfgfk
alralrledlripvayvkt

Timeline for d1upmr1:

• d1upmr1 first appeared in SCOPe 2.03
  
• d1upmr1 appears in SCOPe 2.05
  
• d1upmr1 appears in the current release, SCOPe 2.08