SCOPe 2.08: Domain d3vmka1: 3vmk A:2-363

Lineage for d3vmka1 (3vmk A:2-363)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.77: Isocitrate/Isopropylmalate dehydrogenase-like [53658] (1 superfamily)
   consists of two intertwined (sub)domains related by pseudo dyad; duplication
   3 layers: a/b/a; single mixed beta-sheet of 10 strands, order 213A945867 (A=10); strands from 5 to 9 are antiparallel to the rest

4. Superfamily c.77.1: Isocitrate/Isopropylmalate dehydrogenase-like [53659] (6 families)
   the constituent families form similar dimers

5. Family c.77.1.1: Dimeric isocitrate & isopropylmalate dehydrogenases [53660] (4 proteins)
   the active site is between the two identical subunits

6. Protein 3-isopropylmalate dehydrogenase, IPMDH [53661] (11 species)

7. Species Shewanella benthica [TaxId:43661] [195907] (1 PDB entry)

8. Domain d3vmka1: 3vmk A:2-363 [197350]
   Other proteins in same PDB: d3vmka2, d3vmkb2
   automated match to d1cnza_
   complexed with cl, ipm, mg

Details for d3vmka1

PDB Entry: 3vmk, 1.48 Å

PDB Description: 3-isopropylmalate dehydrogenase from shewanella benthica db21 mt-2

PDB Compounds: (A:) 3-isopropylmalate dehydrogenase

SCOPe Domain Sequences for d3vmka1:

Sequence; same for both SEQRES and ATOM records:

>d3vmka1 c.77.1.1 (A:2-363) 3-isopropylmalate dehydrogenase, IPMDH {Shewanella benthica [TaxId: 43661]}
syqiavlagdgigpevmaearkvlaavekrfdlsieyseydvggaaidnhgcplpeatlk
gceaadavlfgsvggpkwehlppndqpergallplrghfelfcnmrpaklhpglehmspl
rsdisekgfdilcvreltggiyfgkpkgrqgegeneeafdtmrysrkeirriakiafesa
qgrrkkvtsvdkanvlacsvlwrevveevakdypdvelehiyidnatmqllrrpnefdvm
lcsnlfgdivsdeiamltgsmgllasismnsqgfgmyepaggsapdiagqgianpvaqil
saalllrhslkledaalaieaavskalsdgyltcellpasersqakstsqmgdyiaqaia
eg

Timeline for d3vmka1:

• d3vmka1 first appeared in SCOPe 2.02, called d3vmka_
  
• d3vmka1 appears in SCOPe 2.07