SCOPe 2.08: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.08
Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
Fold d.3: Cysteine proteinases [54000] (1 superfamily)
consists of one alpha-helix and 4 strands of antiparallel beta-sheet and contains the catalytic triad Cys-His-Asn
Superfamily d.3.1: Cysteine proteinases [54001] (24 families)
the constitute families differ by insertion into and circular permutation of the common catalytic core made of one alpha-helix and 3-strands of beta-sheet
Family d.3.1.11: Ubiquitin thiolesterase protein OTUB2 (Otubain-2) [110773] (2 proteins)
probably the same as Pfam PF02338, OTU-like cysteine protease, but 1TFF (Uniprot Q96DC9) was not detected by the Pfam model
Protein automated matches [197305] (1 species)
not a true protein

Species:

Human (Homo sapiens) [TaxId:9606] [197306] (13 PDB entries)
1. Domains for 4fjv:
  1. Domain d4fjva1: 4fjv A:3-232 [197307]
    Other proteins in same PDB: d4fjva2, d4fjvb1, d4fjvb2, d4fjvd1, d4fjvd2
    automated match to d1tffa_
    complexed with gol, neh
  2. Domain d4fjvc_: 4fjv C: [202037]
    Other proteins in same PDB: d4fjva2, d4fjvb1, d4fjvb2, d4fjvd1, d4fjvd2
    automated match to d4fjva_
    complexed with gol, neh
2. Domain for 5qio:
  - Domain d5qioa_: 5qio A: [378360]
    automated match to d4fjva_
    complexed with j4y, unl
3. Domain for 5qip:
  - Domain d5qipa_: 5qip A: [378375]
    automated match to d4fjva_
    complexed with edo, j51, peg
4. Domain for 5qiq:
  - Domain d5qiqa_: 5qiq A: [378383]
    automated match to d4fjva_
    complexed with edo, j5a, peg
5. Domain for 5qir:
  - Domain d5qira_: 5qir A: [378336]
    automated match to d4fjva_
    complexed with edo, j5d, peg
6. Domain for 5qis:
  - Domain d5qisa_: 5qis A: [378382]
    automated match to d4fjva_
    complexed with edo, j5g, peg
7. Domain for 5qit:
  - Domain d5qita_: 5qit A: [378340]
    automated match to d4fjva_
    complexed with edo, j5j, peg
8. Domain for 5qiu:
  - Domain d5qiua_: 5qiu A: [378343]
    automated match to d4fjva_
    complexed with edo, j5m, unl
9. Domain for 5qiv:
  - Domain d5qiva_: 5qiv A: [378363]
    automated match to d4fjva_
    complexed with edo, j5p, unl
10. Domain for 5qiw:
  - Domain d5qiwa_: 5qiw A: [378337]
    automated match to d4fjva_
    complexed with j5s, unl
11. Domain for 5qix:
  - Domain d5qixa_: 5qix A: [378367]
    automated match to d4fjva_
    complexed with edo, j5v, unl
12. Domain for 5qiy:
  - Domain d5qiya_: 5qiy A: [378351]
    automated match to d4fjva_
    complexed with j61, unl
13. Domain for 5qiz:
  - Domain d5qiza_: 5qiz A: [378365]
    automated match to d4fjva_
    complexed with j64, unl

More info for Protein automated matches from d.3.1.11: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)

Timeline for Protein automated matches from d.3.1.11: Ubiquitin thiolesterase protein OTUB2 (Otubain-2):

Protein automated matches from d.3.1.11: Ubiquitin thiolesterase protein OTUB2 (Otubain-2) first appeared in SCOPe 2.02
Protein automated matches from d.3.1.11: Ubiquitin thiolesterase protein OTUB2 (Otubain-2) appears in SCOPe 2.07