Lineage for d4kgna_ (4kgn A:)

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2492420Fold c.116: alpha/beta knot [75216] (1 superfamily)
    core: 3 layers: a/b/a, parallel beta-sheet of 5 strands, order 21435; contains a deep trefoil knot
  4. 2492421Superfamily c.116.1: alpha/beta knot [75217] (9 families) (S)
    known or predicted SAM-dependent methytransferases including the SPOUT 'sequence' superfamily
    all known members have dimeric structures
  5. 2492607Family c.116.1.0: automated matches [191557] (1 protein)
    not a true family
  6. 2492608Protein automated matches [190961] (16 species)
    not a true protein
  7. 2492628Species Burkholderia pseudomallei [TaxId:320372] [197042] (1 PDB entry)
  8. 2492629Domain d4kgna_: 4kgn A: [197043]
    Other proteins in same PDB: d4kgnc2, d4kgnd2, d4kgnf2
    automated match to d3e5ya_
    complexed with cl, sah

Details for d4kgna_

PDB Entry: 4kgn (more details), 2.15 Å

PDB Description: Crystal structure of a tRNA (cytidine(34)-2'-O)-methyltransferase bound to S-adenosyl homocysteine
PDB Compounds: (A:) tRNA (cytidine(34)-2'-O)-methyltransferase

SCOPe Domain Sequences for d4kgna_:

Sequence, based on SEQRES records: (download)

>d4kgna_ c.116.1.0 (A:) automated matches {Burkholderia pseudomallei [TaxId: 320372]}

Sequence, based on observed residues (ATOM records): (download)

>d4kgna_ c.116.1.0 (A:) automated matches {Burkholderia pseudomallei [TaxId: 320372]}

SCOPe Domain Coordinates for d4kgna_:

Click to download the PDB-style file with coordinates for d4kgna_.
(The format of our PDB-style files is described here.)

Timeline for d4kgna_: