Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. 2826024Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2890965Fold c.60: Phosphoglycerate mutase-like [53253] (1 superfamily)
    core: 3 layers, a/b/a; mixed beta-sheet of 6 strands, order 324156; strand 5 is antiparallel to the rest
  4. 2890966Superfamily c.60.1: Phosphoglycerate mutase-like [53254] (4 families) (S)
  5. 2891217Family c.60.1.0: automated matches [196988] (1 protein)
    not a true family
  6. 2891218Protein automated matches [196989] (16 species)
    not a true protein

Species:

  1. 2891219Entamoeba (Entamoeba histolytica) [TaxId:5759] [399928] (1 PDB entry)
  2. 2891224Entamoeba histolytica [TaxId:885318] [367266] (2 PDB entries)
    1. Domains for 5zkk:
      1. 2891225Domain d5zkka_: 5zkk A: [367268]
        automated match to d4ij6b_
        complexed with 144, bme, gol, peg, pg4, po4
      2. 2891226Domain d5zkkb_: 5zkk B: [367267]
        automated match to d4ij6b_
        complexed with 144, bme, gol, peg, pg4, po4
    2. Domains for 5zr2:
      1. 2891227Domain d5zr2a_: 5zr2 A: [368269]
        automated match to d4ij6a_
        complexed with peg, pg4, sep, so4; mutant
      2. 2891228Domain d5zr2b_: 5zr2 B: [368282]
        automated match to d4ij6a_
        complexed with peg, pg4, sep, so4; mutant
      3. 2891229Domain d5zr2c_: 5zr2 C: [368263]
        automated match to d4ij6a_
        complexed with peg, pg4, sep, so4; mutant
      4. 2891230Domain d5zr2d_: 5zr2 D: [368276]
        automated match to d4ij6a_
        complexed with peg, pg4, sep, so4; mutant
  3. 2891231Escherichia coli [TaxId:83333] [357325] (1 PDB entry)
  4. 2891236Hafnia alvei [TaxId:569] [196990] (3 PDB entries)
    1. Domain for 4aro:
    2. Domain for 4ars:
    3. Domain for 4aru:
  5. 2891240Hydrogenobacter thermophilus [TaxId:608538] [226622] (2 PDB entries)
    1. Domains for 4ij5:
      1. 2891241Domain d4ij5a_: 4ij5 A: [223217]
        automated match to d3d8ha_
        complexed with cl, edo
      2. 2891242Domain d4ij5b_: 4ij5 B: [223218]
        automated match to d3d8ha_
        complexed with cl, edo
    2. Domains for 4ij6:
      1. 2891243Domain d4ij6a_: 4ij6 A: [223219]
        automated match to d3d8ha_
        complexed with cl, edo, sep; mutant
      2. 2891244Domain d4ij6b_: 4ij6 B: [223220]
        automated match to d3d8ha_
        complexed with cl, edo, sep; mutant
  6. 2891245Klebsiella pneumoniae [TaxId:573] [225887] (3 PDB entries)
    1. Domains for 2wnh:
      1. 2891246Domain d2wnha1: 2wnh A:13-405 [206898]
        Other proteins in same PDB: d2wnha2, d2wnha3, d2wnhb2, d2wnhb3
        automated match to d1dkla_
        complexed with gol, mg, na
      2. 2891247Domain d2wnhb1: 2wnh B:13-405 [206899]
        Other proteins in same PDB: d2wnha2, d2wnha3, d2wnhb2, d2wnhb3
        automated match to d1dkla_
        complexed with gol, mg, na
    2. Domains for 2wni:
      1. 2891252Domain d2wnia1: 2wni A:13-405 [206900]
        Other proteins in same PDB: d2wnia2, d2wnia3, d2wnib2, d2wnic2, d2wnic3, d2wnid2
        automated match to d1dkla_
        complexed with so4
      2. 2891253Domain d2wnib1: 2wni B:13-405 [206901]
        Other proteins in same PDB: d2wnia2, d2wnia3, d2wnib2, d2wnic2, d2wnic3, d2wnid2
        automated match to d1dkla_
        complexed with so4
      3. 2891254Domain d2wnic1: 2wni C:13-405 [206902]
        Other proteins in same PDB: d2wnia2, d2wnia3, d2wnib2, d2wnic2, d2wnic3, d2wnid2
        automated match to d1dkla_
        complexed with so4
      4. 2891255Domain d2wnid1: 2wni D:13-405 [206903]
        Other proteins in same PDB: d2wnia2, d2wnia3, d2wnib2, d2wnic2, d2wnic3, d2wnid2
        automated match to d1dkla_
        complexed with so4
    3. Domains for 2wu0:
      1. 2891248Domain d2wu0a1: 2wu0 A:13-405 [207014]
        Other proteins in same PDB: d2wu0a2, d2wu0a3, d2wu0b2, d2wu0c2, d2wu0c3, d2wu0d2
        automated match to d1dkla_
        complexed with so4
      2. 2891249Domain d2wu0b1: 2wu0 B:13-405 [207015]
        Other proteins in same PDB: d2wu0a2, d2wu0a3, d2wu0b2, d2wu0c2, d2wu0c3, d2wu0d2
        automated match to d1dkla_
        complexed with so4
      3. 2891250Domain d2wu0c1: 2wu0 C:13-405 [207016]
        Other proteins in same PDB: d2wu0a2, d2wu0a3, d2wu0b2, d2wu0c2, d2wu0c3, d2wu0d2
        automated match to d1dkla_
        complexed with so4
      4. 2891251Domain d2wu0d1: 2wu0 D:13-405 [207017]
        Other proteins in same PDB: d2wu0a2, d2wu0a3, d2wu0b2, d2wu0c2, d2wu0c3, d2wu0d2
        automated match to d1dkla_
        complexed with so4
  7. 2891256Lyme disease spirochete (Borrelia burgdorferi) [TaxId:139] [226360] (1 PDB entry)
  8. 2891261Mycobacterium leprae [TaxId:561304] [226361] (1 PDB entry)
  9. 2891263Mycobacterium tuberculosis [TaxId:83332] [230484] (1 PDB entry)
  10. 2891266Naegleria fowleri [TaxId:5763] [338727] (1 PDB entry)
  11. 2891269Neisseria gonorrhoeae [TaxId:521006] [329884] (1 PDB entry)
  12. 2891274Rabbit (Oryctolagus cuniculus) [TaxId:9986] [372280] (1 PDB entry)
  13. 2891276Shigella flexneri [TaxId:42897] [365654] (1 PDB entry)
  14. 2891289Toxoplasma gondii [TaxId:508771] [236270] (1 PDB entry)
  15. 2891294Yersinia kristensenii [TaxId:28152] [256188] (1 PDB entry)
  16. 2891297Zebrafish (Danio rerio) [TaxId:7955] [419841] (2 PDB entries)
    1. Domain for 3e9c:
    2. Domains for 3e9d:
      1. 2891298Domain d3e9da_: 3e9d A: [413142]
        automated match to d6h26a_
        complexed with k, po4
      2. 2891299Domain d3e9db_: 3e9d B: [413143]
        automated match to d6h26a_
        complexed with k, po4

More info for Protein automated matches from c.60.1.0: automated matches

Timeline for Protein automated matches from c.60.1.0: automated matches: