Species:

1. Entamoeba (Entamoeba histolytica) [TaxId:5759] [399928] (1 PDB entry)

   • Domains for 6m1x:

     1. Domain d6m1xa_: 6m1x A: [399929] automated match to d4ij6b_ complexed with 3pg, po4

     2. Domain d6m1xb_: 6m1x B: [399962] automated match to d4ij6b_ complexed with 3pg, po4

     3. Domain d6m1xc_: 6m1x C: [399976] automated match to d4ij6b_ complexed with 3pg, po4

     4. Domain d6m1xd_: 6m1x D: [399956] automated match to d4ij6b_ complexed with 3pg, po4

2. Entamoeba histolytica [TaxId:885318] [367266] (2 PDB entries)

   1. Domains for 5zkk:

      1. Domain d5zkka_: 5zkk A: [367268] automated match to d4ij6b_ complexed with 144, bme, gol, peg, pg4, po4

      2. Domain d5zkkb_: 5zkk B: [367267] automated match to d4ij6b_ complexed with 144, bme, gol, peg, pg4, po4

   2. Domains for 5zr2:

      1. Domain d5zr2a_: 5zr2 A: [368269] automated match to d4ij6a_ complexed with peg, pg4, sep, so4; mutant

      2. Domain d5zr2b_: 5zr2 B: [368282] automated match to d4ij6a_ complexed with peg, pg4, sep, so4; mutant

      3. Domain d5zr2c_: 5zr2 C: [368263] automated match to d4ij6a_ complexed with peg, pg4, sep, so4; mutant

      4. Domain d5zr2d_: 5zr2 D: [368276] automated match to d4ij6a_ complexed with peg, pg4, sep, so4; mutant

3. Escherichia coli [TaxId:83333] [357325] (1 PDB entry)

   • Domains for 6e4b:

     1. Domain d6e4ba1: 6e4b A:1-202 [357357] Other proteins in same PDB: d6e4ba2, d6e4bb2, d6e4bc2, d6e4bd2 automated match to d4ij6b_ complexed with 1pe, cl, gol

     2. Domain d6e4bb1: 6e4b B:1-202 [357384] Other proteins in same PDB: d6e4ba2, d6e4bb2, d6e4bc2, d6e4bd2 automated match to d4ij6b_ complexed with 1pe, cl, gol

     3. Domain d6e4bc1: 6e4b C:1-201 [357326] Other proteins in same PDB: d6e4ba2, d6e4bb2, d6e4bc2, d6e4bd2 automated match to d4ij6b_ complexed with 1pe, cl, gol

     4. Domain d6e4bd1: 6e4b D:1-200 [357366] Other proteins in same PDB: d6e4ba2, d6e4bb2, d6e4bc2, d6e4bd2 automated match to d4ij6b_ complexed with 1pe, cl, gol

4. Hafnia alvei [TaxId:569] [196990] (3 PDB entries)

   1. Domain for 4aro:

      • Domain d4aroa_: 4aro A: [196991] automated match to d1dkma_ complexed with ihs, k, peg

   2. Domain for 4ars:

      • Domain d4arsa_: 4ars A: [196995] automated match to d1dkma_ complexed with act, gol

   3. Domain for 4aru:

      • Domain d4arua_: 4aru A: [196996] automated match to d1dkla_ complexed with cl, k, na, tla

5. Hydrogenobacter thermophilus [TaxId:608538] [226622] (2 PDB entries)

   1. Domains for 4ij5:

      1. Domain d4ij5a_: 4ij5 A: [223217] automated match to d3d8ha_ complexed with cl, edo

      2. Domain d4ij5b_: 4ij5 B: [223218] automated match to d3d8ha_ complexed with cl, edo

   2. Domains for 4ij6:

      1. Domain d4ij6a_: 4ij6 A: [223219] automated match to d3d8ha_ complexed with cl, edo, sep; mutant

      2. Domain d4ij6b_: 4ij6 B: [223220] automated match to d3d8ha_ complexed with cl, edo, sep; mutant

6. Klebsiella pneumoniae [TaxId:573] [225887] (3 PDB entries)

   1. Domains for 2wnh:

      1. Domain d2wnha1: 2wnh A:13-405 [206898] Other proteins in same PDB: d2wnha2, d2wnha3, d2wnhb2, d2wnhb3 automated match to d1dkla_ complexed with gol, mg, na

      2. Domain d2wnhb1: 2wnh B:13-405 [206899] Other proteins in same PDB: d2wnha2, d2wnha3, d2wnhb2, d2wnhb3 automated match to d1dkla_ complexed with gol, mg, na

   2. Domains for 2wni:

      1. Domain d2wnia1: 2wni A:13-405 [206900] Other proteins in same PDB: d2wnia2, d2wnia3, d2wnib2, d2wnic2, d2wnic3, d2wnid2 automated match to d1dkla_ complexed with so4

      2. Domain d2wnib1: 2wni B:13-405 [206901] Other proteins in same PDB: d2wnia2, d2wnia3, d2wnib2, d2wnic2, d2wnic3, d2wnid2 automated match to d1dkla_ complexed with so4

      3. Domain d2wnic1: 2wni C:13-405 [206902] Other proteins in same PDB: d2wnia2, d2wnia3, d2wnib2, d2wnic2, d2wnic3, d2wnid2 automated match to d1dkla_ complexed with so4

      4. Domain d2wnid1: 2wni D:13-405 [206903] Other proteins in same PDB: d2wnia2, d2wnia3, d2wnib2, d2wnic2, d2wnic3, d2wnid2 automated match to d1dkla_ complexed with so4

   3. Domains for 2wu0:

      1. Domain d2wu0a1: 2wu0 A:13-405 [207014] Other proteins in same PDB: d2wu0a2, d2wu0a3, d2wu0b2, d2wu0c2, d2wu0c3, d2wu0d2 automated match to d1dkla_ complexed with so4

      2. Domain d2wu0b1: 2wu0 B:13-405 [207015] Other proteins in same PDB: d2wu0a2, d2wu0a3, d2wu0b2, d2wu0c2, d2wu0c3, d2wu0d2 automated match to d1dkla_ complexed with so4

      3. Domain d2wu0c1: 2wu0 C:13-405 [207016] Other proteins in same PDB: d2wu0a2, d2wu0a3, d2wu0b2, d2wu0c2, d2wu0c3, d2wu0d2 automated match to d1dkla_ complexed with so4

      4. Domain d2wu0d1: 2wu0 D:13-405 [207017] Other proteins in same PDB: d2wu0a2, d2wu0a3, d2wu0b2, d2wu0c2, d2wu0c3, d2wu0d2 automated match to d1dkla_ complexed with so4

7. Lyme disease spirochete (Borrelia burgdorferi) [TaxId:139] [226360] (1 PDB entry)

   • Domains for 4emb:

     1. Domain d4emba1: 4emb A:6-249 [220647] Other proteins in same PDB: d4emba2, d4embb2, d4embc2, d4embd2 automated match to d2hhja_ complexed with cl, edo

     2. Domain d4embb1: 4emb B:6-245 [220648] Other proteins in same PDB: d4emba2, d4embb2, d4embc2, d4embd2 automated match to d2hhja_ complexed with cl, edo

     3. Domain d4embc1: 4emb C:6-248 [220649] Other proteins in same PDB: d4emba2, d4embb2, d4embc2, d4embd2 automated match to d2hhja_ complexed with cl, edo

     4. Domain d4embd1: 4emb D:6-245 [220650] Other proteins in same PDB: d4emba2, d4embb2, d4embc2, d4embd2 automated match to d2hhja_ complexed with cl, edo

8. Mycobacterium leprae [TaxId:561304] [226361] (1 PDB entry)

   • Domain for 4eo9:

     • Domain d4eo9a_: 4eo9 A: [220757] automated match to d2h4xb_ complexed with cl

9. Mycobacterium tuberculosis [TaxId:83332] [230484] (1 PDB entry)

   • Domains for 2a6p:

     1. Domain d2a6pa_: 2a6p A: [230485] automated match to d1h2ea_ complexed with gol, so4

     2. Domain d2a6pb_: 2a6p B: [230486] automated match to d1h2ea_ complexed with gol, so4

10. Naegleria fowleri [TaxId:5763] [338727] (1 PDB entry)

    • Domains for 5vve:

      1. Domain d5vvea1: 5vve A:3-242 [338728] Other proteins in same PDB: d5vvea2, d5vveb2 automated match to d2hhja_ complexed with cl, edo, gol

      2. Domain d5vveb1: 5vve B:3-242 [338731] Other proteins in same PDB: d5vvea2, d5vveb2 automated match to d2hhja_ complexed with cl, edo, gol

11. Neisseria gonorrhoeae [TaxId:521006] [329884] (1 PDB entry)

    • Domains for 5um0:

      1. Domain d5um0a1: 5um0 A:1-227 [329891] Other proteins in same PDB: d5um0a2, d5um0b2, d5um0c2, d5um0d2 automated match to d3gp3a_ complexed with tla

      2. Domain d5um0b1: 5um0 B:1-227 [329885] Other proteins in same PDB: d5um0a2, d5um0b2, d5um0c2, d5um0d2 automated match to d3gp3a_ complexed with tla

      3. Domain d5um0c1: 5um0 C:1-227 [329921] Other proteins in same PDB: d5um0a2, d5um0b2, d5um0c2, d5um0d2 automated match to d3gp3a_ complexed with tla

      4. Domain d5um0d1: 5um0 D:1-227 [329954] Other proteins in same PDB: d5um0a2, d5um0b2, d5um0c2, d5um0d2 automated match to d3gp3a_ complexed with tla

12. Rabbit (Oryctolagus cuniculus) [TaxId:9986] [372280] (1 PDB entry)

    • Domain for 6h26:

      • Domain d6h26a_: 6h26 A: [372281] automated match to d2hhjb_ complexed with cl, edo

13. Shigella flexneri [TaxId:42897] [365654] (1 PDB entry)

    • Domains for 6nru:

      1. Domain d6nrua_: 6nru A: [365666] automated match to d4ij6b_ complexed with cl, edo, gol, peg, pg4, so4

      2. Domain d6nrub_: 6nru B: [365673] automated match to d4ij6b_ complexed with cl, edo, gol, peg, pg4, so4

      3. Domain d6nruc_: 6nru C: [365705] automated match to d4ij6b_ complexed with cl, edo, gol, peg, pg4, so4

      4. Domain d6nrud_: 6nru D: [365659] automated match to d4ij6b_ complexed with cl, edo, gol, peg, pg4, so4

      5. Domain d6nrue_: 6nru E: [365655] automated match to d4ij6b_ complexed with cl, edo, gol, peg, pg4, so4

      6. Domain d6nruf_: 6nru F: [365677] automated match to d4ij6b_ complexed with cl, edo, gol, peg, pg4, so4

      7. Domain d6nrug_: 6nru G: [365689] automated match to d4ij6b_ complexed with cl, edo, gol, peg, pg4, so4

      8. Domain d6nruh_: 6nru H: [365670] automated match to d4ij6b_ complexed with cl, edo, gol, peg, pg4, so4

      9. Domain d6nrui_: 6nru I: [365674] automated match to d4ij6b_ complexed with cl, edo, gol, peg, pg4, so4

      10. Domain d6nruj_: 6nru J: [365672] automated match to d4ij6b_ complexed with cl, edo, gol, peg, pg4, so4

      11. Domain d6nruk_: 6nru K: [365671] automated match to d4ij6b_ complexed with cl, edo, gol, peg, pg4, so4

      12. Domain d6nrul_: 6nru L: [365701] automated match to d4ij6b_ complexed with cl, edo, gol, peg, pg4, so4

14. Toxoplasma gondii [TaxId:508771] [236270] (1 PDB entry)

    • Domains for 4odi:

      1. Domain d4odia_: 4odi A: [236272] automated match to d2hhja_ complexed with na

      2. Domain d4odib_: 4odi B: [236271] automated match to d2hhja_ complexed with na

      3. Domain d4odic_: 4odi C: [240689] automated match to d4odib_ complexed with na

      4. Domain d4odid_: 4odi D: [240690] automated match to d4odib_ complexed with na

15. Yersinia kristensenii [TaxId:28152] [256188] (1 PDB entry)

    • Domains for 4arv:

      1. Domain d4arva_: 4arv A: [251106] automated match to d4arua_ complexed with edo, p15, po4, toe

      2. Domain d4arvb_: 4arv B: [251107] automated match to d4arua_ complexed with edo, p15, po4, toe

16. Zebrafish (Danio rerio) [TaxId:7955] [419841] (2 PDB entries)

    1. Domain for 3e9c:

       • Domain d3e9ca_: 3e9c A: [413141] automated match to d6h26a_ complexed with k

    2. Domains for 3e9d:

       1. Domain d3e9da_: 3e9d A: [413142] automated match to d6h26a_ complexed with k, po4

       2. Domain d3e9db_: 3e9d B: [413143] automated match to d6h26a_ complexed with k, po4

More info for Protein automated matches from c.60.1.0: automated matches

Timeline for Protein automated matches from c.60.1.0: automated matches:

• Protein automated matches from c.60.1.0: automated matches first appeared in SCOPe 2.02
  
• Protein automated matches from c.60.1.0: automated matches appears in SCOPe 2.07