Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2575216Class f: Membrane and cell surface proteins and peptides [56835] (60 folds)
  3. 2577736Fold f.21: Heme-binding four-helical bundle [81344] (3 superfamilies)
    core: four transmembrane helices, up-and-down bundle, binds one or two heme groups in between the helices
  4. 2577737Superfamily f.21.1: Transmembrane di-heme cytochromes [81342] (2 families) (S)
    Three of the four heme-ligands are conserved between the two families; both heme groups bind similarly but not identically
  5. 2577743Family f.21.1.2: Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) [81642] (3 proteins)
    a part (domain) of a larger mitochondrial cytochrome b subunit, separate subunit in plants and cyanobacteria
  6. 2577799Protein automated matches [196844] (6 species)
    not a true protein

Species:

  1. 2577800Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [257467] (1 PDB entry)
  2. 2577802Chicken (Gallus gallus) [TaxId:9031] [255856] (4 PDB entries)
    1. Domains for 3h1h:
      1. 2577807Domain d3h1hc1: 3h1h C:1-261 [246418]
        Other proteins in same PDB: d3h1ha1, d3h1ha2, d3h1hb1, d3h1hb2, d3h1hc2, d3h1hd1, d3h1hd2, d3h1he1, d3h1he2, d3h1hf_, d3h1hg_, d3h1hh_, d3h1hj_, d3h1hn1, d3h1hn2, d3h1ho1, d3h1ho2, d3h1hp2, d3h1hq1, d3h1hq2, d3h1hr1, d3h1hr2, d3h1hs_, d3h1ht_, d3h1hu_, d3h1hw_
        automated match to d3l75p1
        complexed with bog, cdl, fes, gol, hec, hem, pee, unl, uq
      2. 2577808Domain d3h1hp1: 3h1h P:2-261 [246430]
        Other proteins in same PDB: d3h1ha1, d3h1ha2, d3h1hb1, d3h1hb2, d3h1hc2, d3h1hd1, d3h1hd2, d3h1he1, d3h1he2, d3h1hf_, d3h1hg_, d3h1hh_, d3h1hj_, d3h1hn1, d3h1hn2, d3h1ho1, d3h1ho2, d3h1hp2, d3h1hq1, d3h1hq2, d3h1hr1, d3h1hr2, d3h1hs_, d3h1ht_, d3h1hu_, d3h1hw_
        automated match to d3l75p1
        complexed with bog, cdl, fes, gol, hec, hem, pee, unl, uq
    2. Domains for 3h1j:
      1. 2577803Domain d3h1jc1: 3h1j C:1-261 [246442]
        Other proteins in same PDB: d3h1ja1, d3h1ja2, d3h1jb1, d3h1jb2, d3h1jc2, d3h1jd1, d3h1jd2, d3h1je1, d3h1je2, d3h1jf_, d3h1jg_, d3h1jh_, d3h1jj_, d3h1jn1, d3h1jn2, d3h1jo1, d3h1jo2, d3h1jp2, d3h1jq1, d3h1jq2, d3h1jr1, d3h1jr2, d3h1js_, d3h1jt_, d3h1ju_, d3h1jw_
        automated match to d3l75p1
        complexed with cdl, fes, gol, hec, hem, pee, plc, sma, unl, uq
      2. 2577804Domain d3h1jp1: 3h1j P:2-261 [246454]
        Other proteins in same PDB: d3h1ja1, d3h1ja2, d3h1jb1, d3h1jb2, d3h1jc2, d3h1jd1, d3h1jd2, d3h1je1, d3h1je2, d3h1jf_, d3h1jg_, d3h1jh_, d3h1jj_, d3h1jn1, d3h1jn2, d3h1jo1, d3h1jo2, d3h1jp2, d3h1jq1, d3h1jq2, d3h1jr1, d3h1jr2, d3h1js_, d3h1jt_, d3h1ju_, d3h1jw_
        automated match to d3l75p1
        complexed with cdl, fes, gol, hec, hem, pee, plc, sma, unl, uq
    3. Domains for 3l72:
      1. 2577809Domain d3l72c1: 3l72 C:1-261 [247368]
        Other proteins in same PDB: d3l72a1, d3l72a2, d3l72b1, d3l72b2, d3l72c2, d3l72d1, d3l72d2, d3l72e1, d3l72e2, d3l72f_, d3l72g_, d3l72h_, d3l72j_, d3l72n1, d3l72n2, d3l72o1, d3l72o2, d3l72p2, d3l72q1, d3l72q2, d3l72r1, d3l72r2, d3l72s_, d3l72t_, d3l72u_, d3l72w_
        automated match to d3l75p1
        complexed with bog, cdl, fes, gol, hec, hem, ikr, pee, uq
      2. 2577810Domain d3l72p1: 3l72 P:2-261 [247380]
        Other proteins in same PDB: d3l72a1, d3l72a2, d3l72b1, d3l72b2, d3l72c2, d3l72d1, d3l72d2, d3l72e1, d3l72e2, d3l72f_, d3l72g_, d3l72h_, d3l72j_, d3l72n1, d3l72n2, d3l72o1, d3l72o2, d3l72p2, d3l72q1, d3l72q2, d3l72r1, d3l72r2, d3l72s_, d3l72t_, d3l72u_, d3l72w_
        automated match to d3l75p1
        complexed with bog, cdl, fes, gol, hec, hem, ikr, pee, uq
    4. Domains for 3l73:
      1. 2577805Domain d3l73c1: 3l73 C:1-261 [247392]
        Other proteins in same PDB: d3l73a1, d3l73a2, d3l73b1, d3l73b2, d3l73c2, d3l73d1, d3l73d2, d3l73e1, d3l73e2, d3l73f_, d3l73g_, d3l73h_, d3l73j_, d3l73n1, d3l73n2, d3l73o1, d3l73o2, d3l73p2, d3l73q1, d3l73q2, d3l73r1, d3l73r2, d3l73s_, d3l73t_, d3l73u_, d3l73w_
        automated match to d3l75p1
        complexed with bog, cdl, fes, gol, hec, hem, jzz, pee, uq
      2. 2577806Domain d3l73p1: 3l73 P:2-261 [247404]
        Other proteins in same PDB: d3l73a1, d3l73a2, d3l73b1, d3l73b2, d3l73c2, d3l73d1, d3l73d2, d3l73e1, d3l73e2, d3l73f_, d3l73g_, d3l73h_, d3l73j_, d3l73n1, d3l73n2, d3l73o1, d3l73o2, d3l73p2, d3l73q1, d3l73q2, d3l73r1, d3l73r2, d3l73s_, d3l73t_, d3l73u_, d3l73w_
        automated match to d3l75p1
        complexed with bog, cdl, fes, gol, hec, hem, jzz, pee, uq
  3. Cow (Bos taurus) [TaxId:9913] [254895] (2 PDB entries)
    1. Domain for 1sqq:
    2. Domain for 5okd:
  4. 2577813Mastigocladus laminosus [TaxId:83541] [196845] (5 PDB entries)
    1. Domains for 1um3:
      1. 2577818Domain d1um3a_: 1um3 A: [303144]
        Other proteins in same PDB: d1um3b_, d1um3d1, d1um3d2, d1um3f_, d1um3h_, d1um3o_, d1um3q1, d1um3q2, d1um3s_, d1um3t_, d1um3u_
        automated match to d2e74a_
        complexed with bcr, cla, fes, hem, opc, pl9, tds
      2. 2577819Domain d1um3n_: 1um3 N: [303150]
        Other proteins in same PDB: d1um3b_, d1um3d1, d1um3d2, d1um3f_, d1um3h_, d1um3o_, d1um3q1, d1um3q2, d1um3s_, d1um3t_, d1um3u_
        automated match to d2e74a_
        complexed with bcr, cla, fes, hem, opc, pl9, tds
    2. Domain for 2e74:
    3. Domain for 4h13:
    4. Domain for 4i7z:
    5. Domain for 4pv1:
  5. 2577820Nostoc sp. [TaxId:103690] [255731] (2 PDB entries)
    1. Domain for 2zt9:
    2. Domain for 4ogq:
  6. 2577823Saccharomyces cerevisiae [TaxId:764097] [255785] (2 PDB entries)
    1. Domains for 3cx5:
      1. 2577824Domain d3cx5c2: 3cx5 C:1-261 [157081]
        Other proteins in same PDB: d3cx5a1, d3cx5a2, d3cx5b1, d3cx5b2, d3cx5c1, d3cx5d1, d3cx5d2, d3cx5e1, d3cx5e2, d3cx5f_, d3cx5g_, d3cx5h_, d3cx5i_, d3cx5j_, d3cx5k_, d3cx5l1, d3cx5l2, d3cx5m1, d3cx5m2, d3cx5n1, d3cx5o1, d3cx5o2, d3cx5p1, d3cx5p2, d3cx5q_, d3cx5r_, d3cx5s_, d3cx5t_, d3cx5u_, d3cx5v_, d3cx5w_
        automated match to d1kb9c2
        complexed with 6ph, 7ph, 8pe, 9pe, cn3, cn5, fes, hem, sma, suc, umq
      2. 2577825Domain d3cx5n2: 3cx5 N:1-261 [157097]
        Other proteins in same PDB: d3cx5a1, d3cx5a2, d3cx5b1, d3cx5b2, d3cx5c1, d3cx5d1, d3cx5d2, d3cx5e1, d3cx5e2, d3cx5f_, d3cx5g_, d3cx5h_, d3cx5i_, d3cx5j_, d3cx5k_, d3cx5l1, d3cx5l2, d3cx5m1, d3cx5m2, d3cx5n1, d3cx5o1, d3cx5o2, d3cx5p1, d3cx5p2, d3cx5q_, d3cx5r_, d3cx5s_, d3cx5t_, d3cx5u_, d3cx5v_, d3cx5w_
        automated match to d1kb9c2
        complexed with 6ph, 7ph, 8pe, 9pe, cn3, cn5, fes, hem, sma, suc, umq
    2. Domains for 3cxh:
      1. 2577826Domain d3cxhc2: 3cxh C:1-261 [157114]
        Other proteins in same PDB: d3cxha1, d3cxha2, d3cxhb1, d3cxhb2, d3cxhc1, d3cxhd1, d3cxhd2, d3cxhe1, d3cxhe2, d3cxhf_, d3cxhg_, d3cxhh_, d3cxhi_, d3cxhj_, d3cxhk_, d3cxhl1, d3cxhl2, d3cxhm1, d3cxhm2, d3cxhn1, d3cxho1, d3cxho2, d3cxhp1, d3cxhp2, d3cxhq_, d3cxhr_, d3cxhs_, d3cxht_, d3cxhu_, d3cxhv_, d3cxhw_
        automated match to d1kb9c2
        complexed with 6ph, 7ph, 8pe, 9pe, cn6, fes, hem, sma, suc, umq
      2. 2577827Domain d3cxhn2: 3cxh N:1-261 [157130]
        Other proteins in same PDB: d3cxha1, d3cxha2, d3cxhb1, d3cxhb2, d3cxhc1, d3cxhd1, d3cxhd2, d3cxhe1, d3cxhe2, d3cxhf_, d3cxhg_, d3cxhh_, d3cxhi_, d3cxhj_, d3cxhk_, d3cxhl1, d3cxhl2, d3cxhm1, d3cxhm2, d3cxhn1, d3cxho1, d3cxho2, d3cxhp1, d3cxhp2, d3cxhq_, d3cxhr_, d3cxhs_, d3cxht_, d3cxhu_, d3cxhv_, d3cxhw_
        automated match to d1kb9c2
        complexed with 6ph, 7ph, 8pe, 9pe, cn6, fes, hem, sma, suc, umq

More info for Protein automated matches from f.21.1.2: Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)

Timeline for Protein automated matches from f.21.1.2: Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase):

  • Protein automated matches from f.21.1.2: Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) first appeared in SCOPe 2.02
  • Protein automated matches from f.21.1.2: Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) appears in SCOPe 2.06