Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. 2923792Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. 3010445Fold d.305: NAP-like [143112] (1 superfamily)
    core: central meander 4-stranded beta-sheet (order: 1234) transversed by a C-terminal helix
  4. 3010446Superfamily d.305.1: NAP-like [143113] (2 families) (S)
  5. 3010460Family d.305.1.0: automated matches [196445] (1 protein)
    not a true family
  6. 3010461Protein automated matches [196446] (6 species)
    not a true protein

Species:

  1. 3010462Fungus (Pneumocystis carinii) [TaxId:4754] [364950] (1 PDB entry)
  2. 3010465Malaria parasite (Plasmodium falciparum) [TaxId:5833] [196447] (1 PDB entry)
  3. 3010472Nematode (Caenorhabditis elegans) [TaxId:6239] [364255] (5 PDB entries)
    1. Domains for 6k00:
      1. 3010475Domain d6k00a_: 6k00 A: [375561]
        Other proteins in same PDB: d6k00b2, d6k00d1, d6k00d2
        automated match to d2ayua1
      2. 3010476Domain d6k00b1: 6k00 B:10-294 [375564]
        Other proteins in same PDB: d6k00b2, d6k00d1, d6k00d2
        automated match to d2ayua1
    2. Domains for 6k02:
      1. 3010473Domain d6k02a1: 6k02 A:10-294 [375506]
        Other proteins in same PDB: d6k02a2, d6k02b2
        automated match to d2ayua1
        complexed with zn
      2. 3010474Domain d6k02b1: 6k02 B:10-295 [375575]
        Other proteins in same PDB: d6k02a2, d6k02b2
        automated match to d2ayua1
        complexed with zn
    3. Domains for 6k09:
      1. 3010477Domain d6k09a1: 6k09 A:10-296 [375612]
        Other proteins in same PDB: d6k09a2, d6k09b2, d6k09d1, d6k09d2
        automated match to d2ayua1
      2. 3010478Domain d6k09b1: 6k09 B:10-294 [375604]
        Other proteins in same PDB: d6k09a2, d6k09b2, d6k09d1, d6k09d2
        automated match to d2ayua1
    4. Domains for 6k0c:
      1. 3010479Domain d6k0ca1: 6k0c A:10-296 [375622]
        Other proteins in same PDB: d6k0ca2, d6k0cb2, d6k0cd1, d6k0cd2, d6k0cd3
        automated match to d2ayua1
      2. 3010480Domain d6k0cb1: 6k0c B:10-293 [375546]
        Other proteins in same PDB: d6k0ca2, d6k0cb2, d6k0cd1, d6k0cd2, d6k0cd3
        automated match to d2ayua1
    5. Domains for 6n2g:
      1. 3010481Domain d6n2ga_: 6n2g A: [364273]
        automated match to d2ayua1
      2. 3010482Domain d6n2gb_: 6n2g B: [364261]
        automated match to d2ayua1
      3. 3010483Domain d6n2gc_: 6n2g C: [364256]
        automated match to d2ayua1
      4. 3010484Domain d6n2gd_: 6n2g D: [364269]
        automated match to d2ayua1
  4. 3010485Pneumocystis carinii [TaxId:1408658] [360017] (1 PDB entry)
  5. 3010492Schizosaccharomyces pombe [TaxId:284812] [326619] (2 PDB entries)
    1. Domains for 5gpk:
      1. 3010495Domain d5gpka_: 5gpk A: [326717]
        automated match to d2e50b_
        mutant
      2. 3010496Domain d5gpkb_: 5gpk B: [326652]
        automated match to d2e50b_
        mutant
    2. Domains for 5gpl:
      1. 3010493Domain d5gpla_: 5gpl A: [326623]
        automated match to d2e50b_
      2. 3010494Domain d5gplb_: 5gpl B: [326620]
        automated match to d2e50b_
  6. 3010497Thale cress (Arabidopsis thaliana) [TaxId:3702] [322879] (2 PDB entries)
    1. Domains for 5day:
      1. 3010498Domain d5daya1: 5day A:19-224 [322880]
        Other proteins in same PDB: d5daya2, d5dayb2
        automated match to d2e50b_
        complexed with ca
      2. 3010499Domain d5dayb1: 5day B:19-225 [322955]
        Other proteins in same PDB: d5daya2, d5dayb2
        automated match to d2e50b_
        complexed with ca
    2. Domains for 7c7x:
      1. 3010500Domain d7c7xe1: 7c7x E:19-224 [394468]
        Other proteins in same PDB: d7c7xa_, d7c7xb_, d7c7xc_, d7c7xd_, d7c7xe2
        automated match to d2e50b_
        complexed with gol
      2. 3010501Domain d7c7xf_: 7c7x F: [394444]
        Other proteins in same PDB: d7c7xa_, d7c7xb_, d7c7xc_, d7c7xd_, d7c7xe2
        automated match to d2e50b_
        complexed with gol

More info for Protein automated matches from d.305.1.0: automated matches

Timeline for Protein automated matches from d.305.1.0: automated matches: