Lineage for Protein: automated matches

  1. Root: SCOPe 2.05
  2. 1715731Class a: All alpha proteins [46456] (286 folds)
  3. 1749121Fold a.128: Terpenoid synthases [48575] (1 superfamily)
    multihelical; core: 8 helices (C-J) are arranged in 2 parallel layers
  4. 1749122Superfamily a.128.1: Terpenoid synthases [48576] (6 families) (S)
    duplication: two metal-binding sites are related by a pseudo dyad that also relates helices C-F to helices G-J
  5. 1749472Family a.128.1.0: automated matches [196408] (1 protein)
    not a true family
  6. 1749473Protein automated matches [196409] (30 species)
    not a true protein

Species:

  1. 1749474Arabidopsis thaliana [TaxId:3702] [279296] (3 PDB entries)
    1. Domains for 5e8h:
      1. 1749475Domain d5e8ha_: 5e8h A: [279297]
        automated match to d1rqia_
      2. 1749476Domain d5e8hb_: 5e8h B: [279305]
        automated match to d1rqia_
    2. Domains for 5e8k:
      1. 1749479Domain d5e8ka_: 5e8k A: [279298]
        automated match to d3kraa_
      2. 1749480Domain d5e8kb_: 5e8k B: [279299]
        automated match to d3kraa_
    3. Domains for 5e8l:
      1. 1749477Domain d5e8la_: 5e8l A: [279304]
        automated match to d3ts7b_
      2. 1749478Domain d5e8lb_: 5e8l B: [279303]
        automated match to d3ts7b_
  2. 1749481Artemisia annua [TaxId:35608] [226617] (2 PDB entries)
    1. Domain for 4fjq:
    2. Domain for 4gax:
  3. 1749484Artemisia spiciformis [TaxId:235357] [256342] (1 PDB entry)
  4. 1749487Campylobacter jejuni [TaxId:195099] [225924] (1 PDB entry)
  5. 1749490Clostridium perfringens [TaxId:1502] [226250] (1 PDB entry)
  6. 1749493Cryptosporidium parvum [TaxId:353152] [255554] (1 PDB entry)
  7. 1749496Cryptosporidium parvum [TaxId:5807] [255516] (1 PDB entry)
  8. 1749499Gossypium arboreum [TaxId:29729] [225679] (2 PDB entries)
    1. Domains for 3g4d:
      1. 1749500Domain d3g4da2: 3g4d A:227-554 [210352]
        Other proteins in same PDB: d3g4da1, d3g4db1
        automated match to d1hxga2
        complexed with bme, gol
      2. 1749501Domain d3g4db2: 3g4d B:227-554 [210354]
        Other proteins in same PDB: d3g4da1, d3g4db1
        automated match to d1hxga2
        complexed with bme, gol
    2. Domains for 3g4f:
      1. 1749502Domain d3g4fa2: 3g4f A:227-554 [210356]
        Other proteins in same PDB: d3g4fa1, d3g4fb1
        automated match to d1hxga2
        complexed with bme, fpf, mg
      2. 1749503Domain d3g4fb2: 3g4f B:227-554 [210358]
        Other proteins in same PDB: d3g4fa1, d3g4fb1
        automated match to d1hxga2
        complexed with bme, fpf, mg
  9. 1749504Human (Homo sapiens) [TaxId:9606] [231251] (2 PDB entries)
    1. Domain for 2rah:
    2. Domain for 2vf6:
  10. 1749507Legionella pneumophila [TaxId:272624] [232849] (1 PDB entry)
  11. 1749510Leishmania major [TaxId:5664] [236738] (3 PDB entries)
    1. Domains for 4jzb:
      1. 1749513Domain d4jzba_: 4jzb A: [236739]
        automated match to d3id0a_
        complexed with ca, ipe, na, p2h
      2. 1749514Domain d4jzbb_: 4jzb B: [237282]
        automated match to d4jzba_
        complexed with ca, ipe, na, p2h
    2. Domains for 4jzx:
      1. 1749511Domain d4jzxa_: 4jzx A: [237281]
        automated match to d4jzba_
        complexed with 476, ca, ipe
      2. 1749512Domain d4jzxb_: 4jzx B: [237263]
        automated match to d4jzba_
        complexed with 476, ca, ipe
    3. Domains for 4k10:
      1. 1749515Domain d4k10a_: 4k10 A: [238157]
        automated match to d4jzba_
        complexed with act, mes, mg, na, ni9, peg
      2. 1749516Domain d4k10b_: 4k10 B: [238158]
        automated match to d4jzba_
        complexed with act, mes, mg, na, ni9, peg
      3. 1749517Domain d4k10c_: 4k10 C: [238160]
        automated match to d4jzba_
        complexed with act, mes, mg, na, ni9, peg
      4. 1749518Domain d4k10d_: 4k10 D: [238159]
        automated match to d4jzba_
        complexed with act, mes, mg, na, ni9, peg
  12. 1749519Marinomonas sp. [TaxId:314277] [226403] (1 PDB entry)
  13. 1749522Mentha spicata [TaxId:29719] [225229] (2 PDB entries)
    1. Domains for 2ong:
      1. 1749525Domain d2onga2: 2ong A:272-599 [205334]
        Other proteins in same PDB: d2onga1, d2ongb1
        automated match to d1n1ba2
        complexed with btb, fpg, mn
      2. 1749526Domain d2ongb2: 2ong B:272-599 [205336]
        Other proteins in same PDB: d2onga1, d2ongb1
        automated match to d1n1ba2
        complexed with btb, fpg, mn
    2. Domains for 2onh:
      1. 1749523Domain d2onha2: 2onh A:272-599 [205338]
        Other proteins in same PDB: d2onha1, d2onhb1
        automated match to d1n1ba2
        complexed with btb, f3p, mn
      2. 1749524Domain d2onhb2: 2onh B:272-599 [205340]
        Other proteins in same PDB: d2onha1, d2onhb1
        automated match to d1n1ba2
        complexed with btb, f3p, mn
  14. 1749527Mentha x [TaxId:34256] [196410] (7 PDB entries)
    1. Domains for 3kra:
      1. 1749528Domain d3kraa_: 3kra A: [212515]
        automated match to d3oacd_
        complexed with edo, mg
      2. 1749529Domain d3krad_: 3kra D: [212516]
        automated match to d3oacd_
        complexed with edo, mg
    2. Domains for 3krc:
      1. 1749534Domain d3krca_: 3krc A: [212517]
        automated match to d3oacd_
        complexed with edo, ipe
      2. 1749535Domain d3krcd_: 3krc D: [212518]
        automated match to d3oacd_
        complexed with edo, ipe
    3. Domains for 3krf:
      1. 1749532Domain d3krfa_: 3krf A: [212519]
        automated match to d3oacd_
        complexed with dst, edo, ipe, mg, ppv
      2. 1749533Domain d3krfd_: 3krf D: [212520]
        automated match to d3oacd_
        complexed with dst, edo, ipe, mg, ppv
    4. Domains for 3kro:
      1. 1749530Domain d3kroa_: 3kro A: [212521]
        automated match to d3oacd_
        complexed with dst, edo, ipe, mg, ppv
      2. 1749531Domain d3krod_: 3kro D: [212522]
        automated match to d3oacd_
        complexed with dst, edo, ipe, mg, ppv
    5. Domains for 3krp:
      1. 1749538Domain d3krpa_: 3krp A: [212523]
        automated match to d3oacd_
        complexed with edo, gpp, mg, ppv
      2. 1749539Domain d3krpd_: 3krp D: [212524]
        automated match to d3oacd_
        complexed with edo, gpp, mg, ppv
    6. Domains for 3oab:
      1. 1749536Domain d3oaba_: 3oab A: [214270]
        automated match to d3oacd_
        complexed with dst, edo, ipe, mg, ppv; mutant
      2. 1749537Domain d3oabd_: 3oab D: [214271]
        automated match to d3oacd_
        complexed with dst, edo, ipe, mg, ppv; mutant
    7. Domains for 3oac:
      1. 1749540Domain d3oaca_: 3oac A: [200031]
        automated match to d3oacd_
        complexed with dst, ipe, mg; mutant
      2. 1749541Domain d3oacd_: 3oac D: [196411]
        automated match to d3p8ra_
        complexed with dst, ipe, mg; mutant
  15. 1749542Methylococcus capsulatus [TaxId:414] [256105] (1 PDB entry)
  16. 1749545Populus tremula [TaxId:80863] [225928] (2 PDB entries)
    1. Domains for 3n0f:
      1. 1749546Domain d3n0fa2: 3n0f A:266-595 [213666]
        Other proteins in same PDB: d3n0fa1, d3n0fb1
        automated match to d1hxga2
      2. 1749547Domain d3n0fb2: 3n0f B:266-595 [213668]
        Other proteins in same PDB: d3n0fa1, d3n0fb1
        automated match to d1hxga2
    2. Domains for 3n0g:
      1. 1749548Domain d3n0ga2: 3n0g A:266-594 [213670]
        Other proteins in same PDB: d3n0ga1, d3n0gb1
        automated match to d1hxga2
        complexed with dst, mg
      2. 1749549Domain d3n0gb2: 3n0g B:266-594 [213672]
        Other proteins in same PDB: d3n0ga1, d3n0gb1
        automated match to d1hxga2
        complexed with dst, mg
  17. 1749550Pseudomonas aeruginosa [TaxId:208964] [229469] (6 PDB entries)
    1. Domains for 3zcd:
      1. 1749551Domain d3zcda_: 3zcd A: [229470]
        automated match to d3p8ra_
      2. 1749552Domain d3zcdb_: 3zcd B: [233983]
        automated match to d3zcda_
    2. Domains for 3zl6:
      1. 1749555Domain d3zl6a_: 3zl6 A: [236955]
        automated match to d3zcda_
        complexed with dms, mg, nvu
      2. 1749556Domain d3zl6b_: 3zl6 B: [236956]
        automated match to d3zcda_
        complexed with dms, mg, nvu
    3. Domains for 3zmb:
      1. 1749557Domain d3zmba_: 3zmb A: [237240]
        automated match to d3zcda_
        complexed with 6h6, cl, dms
      2. 1749558Domain d3zmbb_: 3zmb B: [237242]
        automated match to d3zcda_
        complexed with 6h6, cl, dms
    4. Domains for 3zmc:
      1. 1749559Domain d3zmca_: 3zmc A: [237241]
        automated match to d3zcda_
        complexed with dms, gol, gpp, mg
      2. 1749560Domain d3zmcb_: 3zmc B: [237239]
        automated match to d3zcda_
        complexed with dms, gol, gpp, mg
    5. Domains for 3zou:
      1. 1749553Domain d3zoua_: 3zou A: [237751]
        automated match to d3zcda_
        complexed with 6h6, dms, gol, gpp, mg
      2. 1749554Domain d3zoub_: 3zou B: [237750]
        automated match to d3zcda_
        complexed with 6h6, dms, gol, gpp, mg
    6. Domains for 4umj:
      1. 1749561Domain d4umja_: 4umj A: [269916]
        automated match to d3zcda_
        complexed with bfq, mg
      2. 1749562Domain d4umjb_: 4umj B: [269915]
        automated match to d3zcda_
        complexed with bfq, mg
  18. 1749563Pseudomonas fluorescens [TaxId:220664] [225836] (3 PDB entries)
    1. Domain for 3lji:
    2. Domain for 3lsn:
    3. Domain for 3p41:
  19. 1749567Rhodobacter capsulatus [TaxId:1061] [196462] (2 PDB entries)
    1. Domains for 3lvs:
      1. 1749570Domain d3lvsa_: 3lvs A: [196800]
        automated match to d3p8ra_
        complexed with gol, po4
      2. 1749571Domain d3lvsb_: 3lvs B: [199764]
        automated match to d3lvsa_
        complexed with gol, po4
    2. Domains for 3m0g:
      1. 1749568Domain d3m0ga_: 3m0g A: [199767]
        automated match to d3m0gb_
      2. 1749569Domain d3m0gb_: 3m0g B: [196463]
        automated match to d3p8ra_
  20. 1749572Roseobacter denitrificans [TaxId:375451] [226733] (2 PDB entries)
    1. Domains for 4lls:
      1. 1749573Domain d4llsa_: 4lls A: [224701]
        automated match to d3lvsa_
        complexed with ca, gst, ipe
      2. 1749574Domain d4llsb_: 4lls B: [224702]
        automated match to d3lvsa_
        complexed with ca, gst, ipe
    2. Domains for 4llt:
      1. 1749575Domain d4llta_: 4llt A: [224703]
        automated match to d3lvsa_
        complexed with ca, ipe
      2. 1749576Domain d4lltb_: 4llt B: [224704]
        automated match to d3lvsa_
        complexed with ca, ipe
  21. 1749577Salvia fruticosa [TaxId:268906] [225285] (1 PDB entry)
  22. 1749580Streptococcus uberis [TaxId:218495] [235348] (2 PDB entries)
    1. Domains for 4lfe:
      1. 1749583Domain d4lfea_: 4lfe A: [235349]
        automated match to d3ucaa_
        complexed with ipe, mg
      2. 1749584Domain d4lfeb_: 4lfe B: [235350]
        automated match to d3ucaa_
        complexed with ipe, mg
    2. Domains for 4lfg:
      1. 1749581Domain d4lfga_: 4lfg A: [253575]
        automated match to d4lfea_
        complexed with ipe, mg
      2. 1749582Domain d4lfgb_: 4lfg B: [253576]
        automated match to d4lfea_
        complexed with ipe, mg
  23. 1749585Streptomyces coelicolor [TaxId:100226] [279808] (1 PDB entry)
  24. 1749588Thermotoga neapolitana [TaxId:309803] [261178] (1 PDB entry)
  25. 1749590Thymus vulgaris [TaxId:49992] [280262] (1 PDB entry)
  26. 1749593Trypanosoma cruzi [TaxId:353153] [256465] (6 PDB entries)
    1. Domains for 3wca:
      1. 1749594Domain d3wcaa_: 3wca A: [256466]
        automated match to d3vjcb_
        complexed with fps, mg
      2. 1749595Domain d3wcab_: 3wca B: [262375]
        automated match to d3wcba_
        complexed with fps, mg
      3. 1749596Domain d3wcac_: 3wca C: [262376]
        automated match to d3wcba_
        complexed with fps, mg
      4. 1749597Domain d3wcad_: 3wca D: [262377]
        automated match to d3wcba_
        complexed with fps, mg
    2. Domains for 3wcb:
      1. 1749614Domain d3wcba_: 3wcb A: [256467]
        automated match to d1ezfa_
        complexed with 8ph
      2. 1749615Domain d3wcbb_: 3wcb B: [262378]
        automated match to d3wcba_
        complexed with 8ph
      3. 1749616Domain d3wcbc_: 3wcb C: [262379]
        automated match to d3wcba_
        complexed with 8ph
      4. 1749617Domain d3wcbd_: 3wcb D: [262380]
        automated match to d3wcba_
        complexed with 8ph
    3. Domains for 3wcc:
      1. 1749598Domain d3wcca_: 3wcc A: [265593]
        automated match to d3wcba_
        complexed with e5s
      2. 1749599Domain d3wccb_: 3wcc B: [265594]
        automated match to d3wcba_
        complexed with e5s
      3. 1749600Domain d3wccc_: 3wcc C: [265595]
        automated match to d3wcba_
        complexed with e5s
      4. 1749601Domain d3wccd_: 3wcc D: [265596]
        automated match to d3wcba_
        complexed with e5s
    4. Domains for 3wce:
      1. 1749606Domain d3wcea_: 3wce A: [265603]
        automated match to d3wcba_
        complexed with er4
      2. 1749607Domain d3wceb_: 3wce B: [265604]
        automated match to d3wcba_
        complexed with er4
      3. 1749608Domain d3wcec_: 3wce C: [265605]
        automated match to d3wcba_
        complexed with er4
      4. 1749609Domain d3wced_: 3wce D: [265606]
        automated match to d3wcba_
        complexed with er4
    5. Domains for 3wcg:
      1. 1749610Domain d3wcga_: 3wcg A: [256468]
        automated match to d3vjcb_
        complexed with bh3
      2. 1749611Domain d3wcgb_: 3wcg B: [256469]
        automated match to d3vjcb_
        complexed with bh3
      3. 1749612Domain d3wcgc_: 3wcg C: [262381]
        automated match to d3wcba_
        complexed with bh3
      4. 1749613Domain d3wcgd_: 3wcg D: [262382]
        automated match to d3wcba_
        complexed with bh3
    6. Domains for 3wsb:
      1. 1749602Domain d3wsba_: 3wsb A: [271054]
        automated match to d3wccc_
        complexed with fps, rwz
      2. 1749603Domain d3wsbb_: 3wsb B: [271055]
        automated match to d3wccc_
        complexed with fps, rwz
      3. 1749604Domain d3wsbc_: 3wsb C: [271056]
        automated match to d3wccc_
        complexed with fps, rwz
      4. 1749605Domain d3wsbd_: 3wsb D: [271053]
        automated match to d3wccc_
        complexed with fps, rwz
  27. 1749618Trypanosoma cruzi [TaxId:5693] [196823] (14 PDB entries)
    1. Domain for 1yhk:
    2. Domain for 1yhl:
    3. Domains for 1yhm:
      1. 1749631Domain d1yhma_: 1yhm A: [203189]
        automated match to d4dwba_
        complexed with ahd, ipe, mg, so4
      2. 1749632Domain d1yhmb_: 1yhm B: [203190]
        automated match to d4dwba_
        complexed with ahd, ipe, mg, so4
      3. 1749633Domain d1yhmc_: 1yhm C: [203191]
        automated match to d4dwba_
        complexed with ahd, ipe, mg, so4
    4. Domain for 3iba:
    5. Domain for 3ick:
    6. Domain for 3icm:
    7. Domain for 3icn:
    8. Domain for 3icz:
    9. Domain for 3id0:
    10. Domain for 4dwb:
    11. Domain for 4dwg:
    12. Domains for 4dxj:
      1. 1749628Domain d4dxja_: 4dxj A: [220096]
        automated match to d4dwba_
        complexed with 0m9, act, ipe, mg, peg, pge, so4
      2. 1749629Domain d4dxjb_: 4dxj B: [220097]
        automated match to d4dwba_
        complexed with 0m9, act, ipe, mg, peg, pge, so4
      3. 1749630Domain d4dxjc_: 4dxj C: [220098]
        automated match to d4dwba_
        complexed with 0m9, act, ipe, mg, peg, pge, so4
    13. Domain for 4dzw:
    14. Domain for 4e1e:
  28. 1749637Trypanosome (Trypanosoma brucei) [TaxId:5691] [230726] (15 PDB entries)
    1. Domains for 2ewg:
      1. 1749659Domain d2ewga_: 2ewg A: [230727]
        automated match to d3id0a_
        complexed with m0n, mg, pgo
      2. 1749660Domain d2ewgb_: 2ewg B: [230728]
        automated match to d3id0a_
        complexed with m0n, mg, pgo
    2. Domains for 2i19:
      1. 1749653Domain d2i19a_: 2i19 A: [242082]
        automated match to d2ewga_
        complexed with 1by, mg
      2. 1749654Domain d2i19b_: 2i19 B: [242083]
        automated match to d2ewga_
        complexed with 1by, mg
    3. Domains for 2ogd:
      1. 1749638Domain d2ogda_: 2ogd A: [243332]
        automated match to d2ewga_
        complexed with act, bme, mg, mpd, suf
      2. 1749639Domain d2ogdb_: 2ogd B: [243333]
        automated match to d2ewga_
        complexed with act, bme, mg, mpd, suf
    4. Domains for 2p1c:
      1. 1749655Domain d2p1ca_: 2p1c A: [243404]
        automated match to d2ewga_
        complexed with act, bme, gg3, mg
      2. 1749656Domain d2p1cb_: 2p1c B: [243405]
        automated match to d2ewga_
        complexed with act, bme, gg3, mg
    5. Domains for 3dyf:
      1. 1749651Domain d3dyfa_: 3dyf A: [245673]
        automated match to d2ewga_
        complexed with act, bme, ipr, mg, mpd, ni9
      2. 1749652Domain d3dyfb_: 3dyf B: [245674]
        automated match to d2ewga_
        complexed with act, bme, ipr, mg, mpd, ni9
    6. Domains for 3dyg:
      1. 1749644Domain d3dyga_: 3dyg A: [245675]
        automated match to d2ewga_
        complexed with act, bme, mg, mpd, ni9
      2. 1749645Domain d3dygb_: 3dyg B: [245676]
        automated match to d2ewga_
        complexed with act, bme, mg, mpd, ni9
    7. Domains for 3dyh:
      1. 1749642Domain d3dyha_: 3dyh A: [245677]
        automated match to d2ewga_
        complexed with 721, mg
      2. 1749643Domain d3dyhb_: 3dyh B: [245678]
        automated match to d2ewga_
        complexed with 721, mg
    8. Domains for 3efq:
      1. 1749646Domain d3efqa_: 3efq A: [245857]
        automated match to d2ewga_
        complexed with 714, mg
      2. 1749647Domain d3efqb_: 3efq B: [245858]
        automated match to d2ewga_
        complexed with 714, mg
    9. Domains for 3egt:
      1. 1749640Domain d3egta_: 3egt A: [245861]
        automated match to d1yhla_
        complexed with 722, mg
      2. 1749641Domain d3egtb_: 3egt B: [245862]
        automated match to d1yhla_
        complexed with 722, mg
    10. Domains for 4rxc:
      1. 1749661Domain d4rxca_: 4rxc A: [271500]
        automated match to d1yhla_
        complexed with hrx, mg
      2. 1749662Domain d4rxcb_: 4rxc B: [271501]
        automated match to d1yhla_
        complexed with hrx, mg
    11. Domains for 4rxd:
      1. 1749648Domain d4rxda_: 4rxd A: [271503]
        automated match to d1yhla_
        complexed with mg, ris
      2. 1749649Domain d4rxdb_: 4rxd B: [271499]
        automated match to d1yhla_
        complexed with mg, ris
      3. 1749650Domain d4rxdc_: 4rxd C: [271502]
        automated match to d1yhla_
        complexed with mg, ris
    12. Domains for 4rxe:
      1. 1749665Domain d4rxea_: 4rxe A: [271506]
        automated match to d1yhla_
        complexed with 3yq, mg
      2. 1749666Domain d4rxeb_: 4rxe B: [271507]
        automated match to d1yhla_
        complexed with 3yq, mg
    13. Domains for 4ryp:
      1. 1749657Domain d4rypa_: 4ryp A: [271505]
        automated match to d1yhla_
      2. 1749658Domain d4rypb_: 4ryp B: [271504]
        automated match to d1yhla_
    14. Domains for 5ael:
      1. 1749667Domain d5aela_: 5ael A: [278532]
        automated match to d2ogda_
        complexed with mg, qaf
      2. 1749668Domain d5aelb_: 5ael B: [278535]
        automated match to d2ogda_
        complexed with mg, qaf
    15. Domains for 5afx:
      1. 1749663Domain d5afxa_: 5afx A: [278533]
        automated match to d2ogda_
        complexed with mg, pvz
      2. 1749664Domain d5afxb_: 5afx B: [278534]
        automated match to d2ogda_
        complexed with mg, pvz
  29. 1749669White mustard (Sinapis alba) [TaxId:3728] [230881] (1 PDB entry)
  30. 1749672Zymomonas mobilis [TaxId:264203] [226672] (1 PDB entry)

More info for Protein automated matches from a.128.1.0: automated matches

Timeline for Protein automated matches from a.128.1.0: automated matches: