Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2434694Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2528466Fold c.116: alpha/beta knot [75216] (1 superfamily)
    core: 3 layers: a/b/a, parallel beta-sheet of 5 strands, order 21435; contains a deep trefoil knot
  4. 2528467Superfamily c.116.1: alpha/beta knot [75217] (9 families) (S)
    known or predicted SAM-dependent methytransferases including the SPOUT 'sequence' superfamily
    all known members have dimeric structures
  5. 2528542Family c.116.1.4: tRNA(m1G37)-methyltransferase TrmD [89629] (2 proteins)
    fold and dimerisation mode are similar to those of the YbeA-like family; contains additional C-terminal all-alpha subdomain
  6. 2528555Protein automated matches [196235] (4 species)
    not a true protein

Species:

  1. 2528556Haemophilus influenzae [TaxId:71421] [196236] (37 PDB entries)
    1. Domain for 3axz:
    2. Domains for 4mcb:
      1. 2528559Domain d4mcba_: 4mcb A: [235592]
        automated match to d4mcca_
        protein/RNA complex; complexed with 21w, act, gol, so4
      2. 2528560Domain d4mcbb_: 4mcb B: [240533]
        automated match to d1uaja_
        protein/RNA complex; complexed with 21w, act, gol, so4
    3. Domains for 4mcc:
      1. 2528561Domain d4mcca_: 4mcc A: [227801]
        automated match to d1uaja_
        complexed with 21x
      2. 2528562Domain d4mccb_: 4mcc B: [240534]
        automated match to d1uaja_
        complexed with 21x
    4. Domain for 4mcd:
    5. Domain for 4ypw:
    6. Domain for 4ypx:
    7. Domain for 4ypy:
    8. Domain for 4ypz:
    9. Domain for 4yq0:
    10. Domain for 4yq1:
    11. Domain for 4yq2:
    12. Domain for 4yq3:
    13. Domain for 4yq4:
    14. Domain for 4yq5:
    15. Domain for 4yq6:
    16. Domain for 4yq7:
    17. Domain for 4yq8:
    18. Domain for 4yq9:
    19. Domain for 4yqa:
    20. Domain for 4yqb:
    21. Domain for 4yqc:
    22. Domain for 4yqd:
    23. Domain for 4yqg:
    24. Domain for 4yqi:
    25. Domain for 4yqj:
    26. Domain for 4yqk:
    27. Domain for 4yql:
    28. Domain for 4yqn:
    29. Domain for 4yqo:
    30. Domain for 4yqp:
    31. Domain for 4yqq:
    32. Domain for 4yqr:
    33. Domain for 4yqs:
    34. Domain for 4yqt:
    35. Domain for 4yvg:
    36. Domain for 4yvh:
    37. Domain for 5d9f:
  2. 2528596Mycobacterium tuberculosis [TaxId:83331] [365694] (2 PDB entries)
    1. Domains for 5zhi:
      1. 2528597Domain d5zhia_: 5zhi A: [365704]
        automated match to d1oy5a_
      2. 2528598Domain d5zhib_: 5zhi B: [365695]
        automated match to d1oy5a_
    2. Domain for 5zhl:
  3. 2528600Mycobacterium tuberculosis [TaxId:83332] [365707] (3 PDB entries)
    1. Domain for 5zhj:
    2. Domain for 5zhk:
    3. Domain for 6jof:
  4. 2528604Pseudomonas aeruginosa [TaxId:208963] [343276] (7 PDB entries)
    1. Domains for 5wyq:
      1. 2528605Domain d5wyqa1: 5wyq A:5-250 [343350]
        Other proteins in same PDB: d5wyqa2, d5wyqb2
        automated match to d1p9pa_
        complexed with sam
      2. 2528606Domain d5wyqb1: 5wyq B:5-250 [343364]
        Other proteins in same PDB: d5wyqa2, d5wyqb2
        automated match to d1p9pa_
        complexed with sam
    2. Domains for 5wyr:
      1. 2528609Domain d5wyra1: 5wyr A:5-250 [343277]
        Other proteins in same PDB: d5wyra2, d5wyrb2
        automated match to d1p9pa_
        complexed with sfg
      2. 2528610Domain d5wyrb1: 5wyr B:5-250 [343344]
        Other proteins in same PDB: d5wyra2, d5wyrb2
        automated match to d1p9pa_
        complexed with sfg
    3. Domains for 5zhm:
      1. 2528617Domain d5zhma1: 5zhm A:5-250 [365706]
        Other proteins in same PDB: d5zhma2, d5zhmb2
        automated match to d1p9pa_
        protein/RNA complex; complexed with 9d3, sam
      2. 2528618Domain d5zhmb1: 5zhm B:5-250 [365690]
        Other proteins in same PDB: d5zhma2, d5zhmb2
        automated match to d1p9pa_
        protein/RNA complex; complexed with 9d3, sam
    4. Domains for 5zhn:
      1. 2528613Domain d5zhna1: 5zhn A:5-249 [366973]
        Other proteins in same PDB: d5zhna2, d5zhnb2
        automated match to d1p9pa_
        protein/RNA complex; complexed with 9d0
      2. 2528614Domain d5zhnb1: 5zhn B:5-250 [366986]
        Other proteins in same PDB: d5zhna2, d5zhnb2
        automated match to d1p9pa_
        protein/RNA complex; complexed with 9d0
    5. Domains for 6afk:
      1. 2528615Domain d6afka1: 6afk A:5-250 [372812]
        Other proteins in same PDB: d6afka2, d6afkb2
        automated match to d1p9pa_
        protein/RNA complex; complexed with 9wo, sam
      2. 2528616Domain d6afkb1: 6afk B:5-250 [372811]
        Other proteins in same PDB: d6afka2, d6afkb2
        automated match to d1p9pa_
        protein/RNA complex; complexed with 9wo, sam
    6. Domains for 6jki:
      1. 2528611Domain d6jkia1: 6jki A:5-250 [370505]
        Other proteins in same PDB: d6jkia2, d6jkib2
        automated match to d1p9pa_
        complexed with gol, mn, na, peg, sfg
      2. 2528612Domain d6jkib1: 6jki B:5-250 [370476]
        Other proteins in same PDB: d6jkia2, d6jkib2
        automated match to d1p9pa_
        complexed with gol, mn, na, peg, sfg
    7. Domains for 6joe:
      1. 2528607Domain d6joea1: 6joe A:5-250 [373600]
        Other proteins in same PDB: d6joea2, d6joeb2
        automated match to d1p9pa_
        protein/RNA complex; complexed with bwr, po4, sam
      2. 2528608Domain d6joeb1: 6joe B:5-250 [373596]
        Other proteins in same PDB: d6joea2, d6joeb2
        automated match to d1p9pa_
        protein/RNA complex; complexed with bwr, po4, sam

More info for Protein automated matches from c.116.1.4: tRNA(m1G37)-methyltransferase TrmD

Timeline for Protein automated matches from c.116.1.4: tRNA(m1G37)-methyltransferase TrmD: