Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2089713Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2089714Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2089715Superfamily c.1.1: Triosephosphate isomerase (TIM) [51351] (2 families) (S)
  5. 2089716Family c.1.1.1: Triosephosphate isomerase (TIM) [51352] (2 proteins)
    automatically mapped to Pfam PF00121
  6. 2090066Protein automated matches [196175] (7 species)
    not a true protein

Species:

  1. 2090067Gemmata obscuriglobus [TaxId:114] [275087] (1 PDB entry)
  2. 2090070Human (Homo sapiens) [TaxId:9606] [268561] (3 PDB entries)
    1. Domains for 4poc:
      1. 2090071Domain d4poca_: 4poc A: [268565]
        automated match to d1wyia_
        complexed with br, k, na, po4
      2. 2090072Domain d4pocb_: 4poc B: [268563]
        automated match to d1wyia_
        complexed with br, k, na, po4
    2. Domains for 4pod:
      1. 2090075Domain d4poda_: 4pod A: [268562]
        automated match to d1wyia_
        complexed with br, k, na, po4; mutant
      2. 2090076Domain d4podb_: 4pod B: [268579]
        automated match to d1wyia_
        complexed with br, k, na, po4; mutant
    3. Domains for 4zvj:
      1. 2090073Domain d4zvja_: 4zvj A: [312452]
        automated match to d1wyia_
        complexed with k, na
      2. 2090074Domain d4zvjb_: 4zvj B: [312460]
        automated match to d1wyia_
        complexed with k, na
  3. 2090077Leishmania sp. [TaxId:438838] [319546] (1 PDB entry)
  4. 2090080Litopenaeus vannamei [TaxId:6689] [323300] (1 PDB entry)
  5. 2090083Rhipicephalus microplus [TaxId:6941] [196184] (1 PDB entry)
  6. 2090086Trypanosoma brucei [TaxId:5702] [271658] (9 PDB entries)
    1. Domains for 2x0m:
      1. 2090087Domain d2x0ma_: 2x0m A: [304621]
        automated match to d4pc8a_
        complexed with 3pg
      2. 2090088Domain d2x0mb_: 2x0m B: [304622]
        automated match to d4pc8a_
        complexed with 3pg
    2. Domain for 4pc8:
    3. Domains for 4pcf:
      1. 2090110Domain d4pcfa_: 4pcf A: [271662]
        automated match to d1tpfa_
      2. 2090111Domain d4pcfb_: 4pcf B: [271661]
        automated match to d1tpfa_
      3. 2090112Domain d4pcfc_: 4pcf C: [271663]
        automated match to d1tpfa_
    4. Domains for 5i3f:
      1. 2090090Domain d5i3fa_: 5i3f A: [317490]
        automated match to d1tpfa_
      2. 2090091Domain d5i3fb_: 5i3f B: [317515]
        automated match to d1tpfa_
      3. 2090092Domain d5i3fc_: 5i3f C: [317518]
        automated match to d1tpfa_
      4. 2090093Domain d5i3fd_: 5i3f D: [317544]
        automated match to d1tpfa_
    5. Domains for 5i3g:
      1. 2090096Domain d5i3ga_: 5i3g A: [317522]
        automated match to d1tpfa_
      2. 2090097Domain d5i3gb_: 5i3g B: [317508]
        automated match to d1tpfa_
      3. 2090098Domain d5i3gc_: 5i3g C: [317607]
        automated match to d1tpfa_
      4. 2090099Domain d5i3gd_: 5i3g D: [317555]
        automated match to d1tpfa_
    6. Domains for 5i3h:
      1. 2090108Domain d5i3ha_: 5i3h A: [317516]
        automated match to d1tpfa_
        complexed with k, pga
      2. 2090109Domain d5i3hb_: 5i3h B: [317496]
        automated match to d1tpfa_
        complexed with k, pga
    7. Domains for 5i3i:
      1. 2090100Domain d5i3ia_: 5i3i A: [317570]
        automated match to d1tpfa_
        complexed with pga
      2. 2090101Domain d5i3ib_: 5i3i B: [317511]
        automated match to d1tpfa_
        complexed with pga
      3. 2090102Domain d5i3ic_: 5i3i C: [317517]
        automated match to d1tpfa_
        complexed with pga
      4. 2090103Domain d5i3id_: 5i3i D: [317579]
        automated match to d1tpfa_
        complexed with pga
    8. Domains for 5i3j:
      1. 2090094Domain d5i3ja_: 5i3j A: [317541]
        automated match to d1tpfa_
        complexed with na
      2. 2090095Domain d5i3jb_: 5i3j B: [317546]
        automated match to d1tpfa_
        complexed with na
    9. Domains for 5i3k:
      1. 2090104Domain d5i3ka_: 5i3k A: [317499]
        automated match to d1tpfa_
        complexed with na, pga
      2. 2090105Domain d5i3kb_: 5i3k B: [317545]
        automated match to d1tpfa_
        complexed with na, pga
      3. 2090106Domain d5i3kc_: 5i3k C: [317600]
        automated match to d1tpfa_
        complexed with na, pga
      4. 2090107Domain d5i3kd_: 5i3k D: [317501]
        automated match to d1tpfa_
        complexed with na, pga
  7. 2090113Trypanosoma cruzi [TaxId:5693] [196176] (1 PDB entry)

More info for Protein automated matches from c.1.1.1: Triosephosphate isomerase (TIM)

Timeline for Protein automated matches from c.1.1.1: Triosephosphate isomerase (TIM):