Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. 2826024Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2826025Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2826026Superfamily c.1.1: Triosephosphate isomerase (TIM) [51351] (2 families) (S)
  5. 2826027Family c.1.1.1: Triosephosphate isomerase (TIM) [51352] (2 proteins)
    automatically mapped to Pfam PF00121
  6. 2826415Protein automated matches [196175] (9 species)
    not a true protein

Species:

  1. 2826416Gemmata obscuriglobus [TaxId:114] [275087] (1 PDB entry)
  2. 2826419Human (Homo sapiens) [TaxId:9606] [268561] (2 PDB entries)
    1. Domains for 4poc:
      1. 2826420Domain d4poca_: 4poc A: [268565]
        automated match to d1wyia_
        complexed with br, k, na, po4
      2. 2826421Domain d4pocb_: 4poc B: [268563]
        automated match to d1wyia_
        complexed with br, k, na, po4
    2. Domains for 4pod:
      1. 2826422Domain d4poda_: 4pod A: [268562]
        automated match to d1wyia_
        complexed with br, k, na, po4; mutant
      2. 2826423Domain d4podb_: 4pod B: [268579]
        automated match to d1wyia_
        complexed with br, k, na, po4; mutant
  3. 2826424Leishmania sp. [TaxId:438838] [319546] (1 PDB entry)
  4. 2826427Opisthorchis viverrini [TaxId:6198] [359399] (4 PDB entries)
    1. Domains for 5zfx:
      1. 2826430Domain d5zfxa_: 5zfx A: [359440]
        automated match to d1mo0b_
        complexed with mg
      2. 2826431Domain d5zfxb_: 5zfx B: [359424]
        automated match to d1mo0b_
        complexed with mg
      3. 2826432Domain d5zfxc_: 5zfx C: [359400]
        automated match to d1mo0b_
        complexed with mg
      4. 2826433Domain d5zfxd_: 5zfx D: [359461]
        automated match to d1mo0b_
        complexed with mg
    2. Domains for 5zg4:
      1. 2826434Domain d5zg4a_: 5zg4 A: [359436]
        automated match to d1mo0b_
        mutant
      2. 2826435Domain d5zg4b_: 5zg4 B: [359406]
        automated match to d1mo0b_
        mutant
      3. 2826436Domain d5zg4c_: 5zg4 C: [359460]
        automated match to d1mo0b_
        mutant
      4. 2826437Domain d5zg4d_: 5zg4 D: [359444]
        automated match to d1mo0b_
        mutant
    3. Domains for 5zg5:
      1. 2826428Domain d5zg5a_: 5zg5 A: [359401]
        automated match to d1mo0b_
        mutant
      2. 2826429Domain d5zg5b_: 5zg5 B: [359402]
        automated match to d1mo0b_
        mutant
    4. Domains for 5zga:
      1. 2826438Domain d5zgaa_: 5zga A: [359445]
        automated match to d1mo0b_
        mutant
      2. 2826439Domain d5zgab_: 5zga B: [359411]
        automated match to d1mo0b_
        mutant
      3. 2826440Domain d5zgac_: 5zga C: [359471]
        automated match to d1mo0b_
        mutant
      4. 2826441Domain d5zgad_: 5zga D: [359435]
        automated match to d1mo0b_
        mutant
  5. 2826442Pacific white shrimp (Litopenaeus vannamei) [TaxId:6689] [323300] (1 PDB entry)
  6. 2826445Rhipicephalus microplus [TaxId:6941] [196184] (1 PDB entry)
  7. 2826448Scylla paramamosain [TaxId:85552] [377658] (1 PDB entry)
  8. 2826451Trypanosoma brucei [TaxId:5702] [271658] (9 PDB entries)
    1. Domains for 2x0m:
      1. 2826452Domain d2x0ma_: 2x0m A: [304621]
        automated match to d4pc8a_
        complexed with 3pg
      2. 2826453Domain d2x0mb_: 2x0m B: [304622]
        automated match to d4pc8a_
        complexed with 3pg
    2. Domain for 4pc8:
    3. Domains for 4pcf:
      1. 2826475Domain d4pcfa_: 4pcf A: [271662]
        automated match to d1tpfa_
      2. 2826476Domain d4pcfb_: 4pcf B: [271661]
        automated match to d1tpfa_
      3. 2826477Domain d4pcfc_: 4pcf C: [271663]
        automated match to d1tpfa_
    4. Domains for 5i3f:
      1. 2826455Domain d5i3fa_: 5i3f A: [317490]
        automated match to d1tpfa_
      2. 2826456Domain d5i3fb_: 5i3f B: [317515]
        automated match to d1tpfa_
      3. 2826457Domain d5i3fc_: 5i3f C: [317518]
        automated match to d1tpfa_
      4. 2826458Domain d5i3fd_: 5i3f D: [317544]
        automated match to d1tpfa_
    5. Domains for 5i3g:
      1. 2826461Domain d5i3ga_: 5i3g A: [317522]
        automated match to d1tpfa_
      2. 2826462Domain d5i3gb_: 5i3g B: [317508]
        automated match to d1tpfa_
      3. 2826463Domain d5i3gc_: 5i3g C: [317607]
        automated match to d1tpfa_
      4. 2826464Domain d5i3gd_: 5i3g D: [317555]
        automated match to d1tpfa_
    6. Domains for 5i3h:
      1. 2826473Domain d5i3ha_: 5i3h A: [317516]
        automated match to d1tpfa_
        complexed with k, pga
      2. 2826474Domain d5i3hb_: 5i3h B: [317496]
        automated match to d1tpfa_
        complexed with k, pga
    7. Domains for 5i3i:
      1. 2826465Domain d5i3ia_: 5i3i A: [317570]
        automated match to d1tpfa_
        complexed with pga
      2. 2826466Domain d5i3ib_: 5i3i B: [317511]
        automated match to d1tpfa_
        complexed with pga
      3. 2826467Domain d5i3ic_: 5i3i C: [317517]
        automated match to d1tpfa_
        complexed with pga
      4. 2826468Domain d5i3id_: 5i3i D: [317579]
        automated match to d1tpfa_
        complexed with pga
    8. Domains for 5i3j:
      1. 2826459Domain d5i3ja_: 5i3j A: [317541]
        automated match to d1tpfa_
        complexed with na
      2. 2826460Domain d5i3jb_: 5i3j B: [317546]
        automated match to d1tpfa_
        complexed with na
    9. Domains for 5i3k:
      1. 2826469Domain d5i3ka_: 5i3k A: [317499]
        automated match to d1tpfa_
        complexed with na, pga
      2. 2826470Domain d5i3kb_: 5i3k B: [317545]
        automated match to d1tpfa_
        complexed with na, pga
      3. 2826471Domain d5i3kc_: 5i3k C: [317600]
        automated match to d1tpfa_
        complexed with na, pga
      4. 2826472Domain d5i3kd_: 5i3k D: [317501]
        automated match to d1tpfa_
        complexed with na, pga
  9. 2826478Trypanosoma cruzi [TaxId:5693] [196176] (1 PDB entry)

More info for Protein automated matches from c.1.1.1: Triosephosphate isomerase (TIM)

Timeline for Protein automated matches from c.1.1.1: Triosephosphate isomerase (TIM):