SCOPe 2.07: Domain d3tmld1: 3tml D:1-283

Lineage for d3tmld1 (3tml D:1-283)

1. Root: SCOPe 2.07

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.10: Aldolase [51569] (9 families)
   Common fold covers whole protein structure

5. Family c.1.10.0: automated matches [191319] (1 protein)
   not a true family

6. Protein automated matches [190115] (91 species)
   not a true protein

7. Species Burkholderia cenocepacia [TaxId:216591] [196152] (1 PDB entry)

8. Domain d3tmld1: 3tml D:1-283 [196153]
   Other proteins in same PDB: d3tmla2, d3tmlb2, d3tmlc2, d3tmld2
   automated match to d3undb_
   complexed with cl, so4

Details for d3tmld1

PDB Entry: 3tml, 1.9 Å

PDB Description: Crystal structure of 2-dehydro-3-deoxyphosphooctonate aldolase from Burkholderia cenocepacia

PDB Compounds: (D:) 2-dehydro-3-deoxyphosphooctonate aldolase

SCOPe Domain Sequences for d3tmld1:

Sequence, based on SEQRES records:

>d3tmld1 c.1.10.0 (D:1-283) automated matches {Burkholderia cenocepacia [TaxId: 216591]}
mklcdfevgldqpffliagtcvveseqmtidtagrlkeiceklnvpfiykssydkanrss
gksfrglgmdeglrilsevkrqlglpvltdvhsideieqvasvvdvlqtpaflcrqtdfi
hacarsgkpvnikkgqflaphdmknvidkardaareaglsedrfmacergvsfgynnlvs
dmrslaimretnapvvfdathsvqlpggqgtssggqrefvpvlaraavatgvaglfmeth
pnpaeaksdgpnavplnrmgalletlvtldqavkrnpflendf

Sequence, based on observed residues (ATOM records):

>d3tmld1 c.1.10.0 (D:1-283) automated matches {Burkholderia cenocepacia [TaxId: 216591]}
mklcdfevgldqpffliagtcvveseqmtidtagrlkeiceklnvpfiykssylgmdegl
rilsevkrqlglpvltdvhsideieqvasvvdvlqtpaflcrqtdfihacarsgkpvnik
kgqflaphdmknvidkardaareaglsedrfmacergvsfgynnlvsdmrslaimretna
pvvfdathsvqlpggqrefvpvlaraavatgvaglfmethpnpaeaksdgpnavplnrmg
alletlvtldqavkrnpflendf

Timeline for d3tmld1:

• d3tmld1 first appeared in SCOPe 2.02, called d3tmld_
  
• d3tmld1 appears in SCOPe 2.06
  
• d3tmld1 appears in the current release, SCOPe 2.08