SCOPe 2.03: Domain d4dgad_: 4dga D:

Lineage for d4dgad_ (4dga D:)

1. Root: SCOPe 2.03

2. Class a: All alpha proteins [46456] (284 folds)

3. Fold a.73: Retrovirus capsid protein, N-terminal core domain [47942] (1 superfamily)
   core: 5 helices; bundle

4. Superfamily a.73.1: Retrovirus capsid protein, N-terminal core domain [47943] (2 families)

5. Family a.73.1.1: Retrovirus capsid protein, N-terminal core domain [47944] (6 proteins)

6. Protein HIV-1 capsid protein [47945] (1 species)

7. Species Human immunodeficiency virus type 1 [TaxId:11676] [47946] (25 PDB entries)

8. Domain d4dgad_: 4dga D: [196072]
   Other proteins in same PDB: d4dgaa_, d4dgab_
   automated match to d1m9dc_

Details for d4dgad_

PDB Entry: 4dga, 1.9 Å

PDB Description: TRIMCyp cyclophilin domain from Macaca mulatta: HIV-1 CA(O-loop) complex

PDB Compounds: (D:) capsid protein

SCOPe Domain Sequences for d4dgad_:

Sequence, based on SEQRES records:

>d4dgad_ a.73.1.1 (D:) HIV-1 capsid protein {Human immunodeficiency virus type 1 [TaxId: 11676]}
pivqnlqgqmvhqaisprtlnawvkvveekafspevipmfsalsegatpqdlntmlntvg
ghqaamqmlketineeaaewdrthppamgplppgqireptgsdiagttstlqeqigwmth
nppipvgeiykrwiilglnkiv

Sequence, based on observed residues (ATOM records):

>d4dgad_ a.73.1.1 (D:) HIV-1 capsid protein {Human immunodeficiency virus type 1 [TaxId: 11676]}
pivhqaisprtlnawvkvveekafspevipmfsalsegatpqdlntmlntvgghqaamqm
lketineeaaewdrthppamgplppgqireptgsdiagttstlqeqigwmthnppipvge
iykrwiilglnkiv

Timeline for d4dgad_:

• d4dgad_ first appeared in SCOPe 2.02
  
• d4dgad_ appears in SCOPe 2.04
  
• d4dgad_ appears in the current release, SCOPe 2.08