SCOPe 2.08: Species: Human enterovirus 71 [TaxId: 39054]

Lineage for Species: Human enterovirus 71 [TaxId: 39054]

Root: SCOPe 2.08
Class b: All beta proteins [48724] (180 folds)

Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies

Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (10 families)

Family b.121.4.1: Picornaviridae-like VP (VP1, VP2, VP3 and VP4) [88634] (10 proteins)
the order of the chains N-VP0-VP3-VP1-C is as in the polyprotein; VP0 is cleaved later upon capsid assembly to VP4 and VP2
there is a different order in the shuffled genome of insect picorna-like proteins (Cricket paralysis virus)

Protein automated matches [190854] (27 species)
not a true protein
Species Human enterovirus 71 [TaxId:39054] [195913] (16 PDB entries)

PDB entries in Species: Human enterovirus 71 [TaxId: 39054]:

Domain(s) for 3vbf:
- Domain d3vbfc_: 3vbf C: [195914]
  Other proteins in same PDB: d3vbfa_, d3vbfb_
  automated match to d1bev3_
  complexed with amp, cl, k, na, sph
Domain(s) for 3vbh:
- Domain d3vbhc_: 3vbh C: [217748]
  Other proteins in same PDB: d3vbha_, d3vbhb_
  automated match to d3vbfc_
  complexed with cl, k, na, sph
Domain(s) for 3zfe:
- Domain d3zfec_: 3zfe C: [196803]
  Other proteins in same PDB: d3zfea_, d3zfeb_
  automated match to d1bev3_
  complexed with cl, na, sph
Domain(s) for 4cdq:
- Domain d4cdqc_: 4cdq C: [236692]
  Other proteins in same PDB: d4cdqa_, d4cdqb_
  automated match to d3vbfc_
  complexed with 7vr, na
Domain(s) for 4cdu:
- Domain d4cduc_: 4cdu C: [236697]
  Other proteins in same PDB: d4cdua_, d4cdub_
  automated match to d3vbfc_
  complexed with cl, na, ym2
Domain(s) for 4cdw:
- Domain d4cdwc_: 4cdw C: [236693]
  Other proteins in same PDB: d4cdwa_, d4cdwb_
  automated match to d3vbfc_
  complexed with na, vr2
Domain(s) for 4cdx:
- Domain d4cdxc_: 4cdx C: [236696]
  Other proteins in same PDB: d4cdxa_, d4cdxb_
  automated match to d3vbfc_
  complexed with jf0, na
Domain(s) for 4cew:
- Domain d4cewc_: 4cew C: [236699]
  Other proteins in same PDB: d4cewa_, d4cewb_
  automated match to d3vbfc_
  complexed with 7j5
Domain(s) for 4cey:
- Domain d4ceyc_: 4cey C: [236698]
  Other proteins in same PDB: d4ceya_, d4ceyb_
  automated match to d3vbfc_
  complexed with 906, na
Domain(s) for 4rqp:
1. Domain d4rqpb_: 4rqp B: [261955]
  Other proteins in same PDB: d4rqpc_, d4rqpg_, d4rqpk_, d4rqpo_
  automated match to d3vbhc_
2. Domain d4rqpf_: 4rqp F: [261954]
  Other proteins in same PDB: d4rqpc_, d4rqpg_, d4rqpk_, d4rqpo_
  automated match to d3vbhc_
3. Domain d4rqpj_: 4rqp J: [261957]
  Other proteins in same PDB: d4rqpc_, d4rqpg_, d4rqpk_, d4rqpo_
  automated match to d3vbhc_
4. Domain d4rqpn_: 4rqp N: [261961]
  Other proteins in same PDB: d4rqpc_, d4rqpg_, d4rqpk_, d4rqpo_
  automated match to d3vbhc_
5. Domain d4rqpr_: 4rqp R: [261966]
  Other proteins in same PDB: d4rqpc_, d4rqpg_, d4rqpk_, d4rqpo_
  automated match to d3vbhc_
Domain(s) for 4rr3:
1. Domain d4rr3b_: 4rr3 B: [267406]
  automated match to d3vbhc_
2. Domain d4rr3f_: 4rr3 F: [267407]
  automated match to d3vbhc_
3. Domain d4rr3j_: 4rr3 J: [267408]
  automated match to d3vbhc_
4. Domain d4rr3n_: 4rr3 N: [267409]
  automated match to d3vbhc_
5. Domain d4rr3r_: 4rr3 R: [267410]
  automated match to d3vbhc_
Domain(s) for 6uh1:
- Domain d6uh1c_: 6uh1 C: [378493]
  Other proteins in same PDB: d6uh1a_, d6uh1b_
  automated match to d3zfec_
  complexed with sph
Domain(s) for 6uh6:
- Domain d6uh6c_: 6uh6 C: [378491]
  Other proteins in same PDB: d6uh6a_, d6uh6b_
  automated match to d3zfec_
  complexed with sph
Domain(s) for 6uh7:
- Domain d6uh7c_: 6uh7 C: [378500]
  Other proteins in same PDB: d6uh7a_, d6uh7b_
  automated match to d3zfec_
  complexed with sph
Domain(s) for 6z3p:
- Domain d6z3pc_: 6z3p C: [393804]
  Other proteins in same PDB: d6z3pa_, d6z3pb_, d6z3ph_, d6z3pl_
  automated match to d3zfec_
  complexed with sph
Domain(s) for 6z3q:
- Domain d6z3qc_: 6z3q C: [393816]
  Other proteins in same PDB: d6z3qa_, d6z3qb_, d6z3qh_, d6z3ql_
  automated match to d3zfec_
  complexed with sph

More info for Species Human enterovirus 71 [TaxId:39054] from b.121.4.1 automated matches

Timeline for Species Human enterovirus 71 [TaxId:39054] from b.121.4.1 automated matches:

Species Human enterovirus 71 [TaxId:39054] from b.121.4.1 automated matches first appeared in SCOPe 2.02
Species Human enterovirus 71 [TaxId:39054] from b.121.4.1 automated matches appears in SCOPe 2.07