SCOPe 2.08: Domain d4faka1: 4fak A:1-159

Lineage for d4faka1 (4fak A:1-159)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.116: alpha/beta knot [75216] (1 superfamily)
   core: 3 layers: a/b/a, parallel beta-sheet of 5 strands, order 21435; contains a deep trefoil knot

4. Superfamily c.116.1: alpha/beta knot [75217] (9 families)
   known or predicted SAM-dependent methytransferases including the SPOUT 'sequence' superfamily
   all known members have dimeric structures

5. Family c.116.1.3: YbeA-like [82371] (5 proteins)
   Pfam PF02590

6. Protein automated matches [195222] (2 species)
   not a true protein

7. Species Staphylococcus aureus [TaxId:1280] [195223] (1 PDB entry)

8. Domain d4faka1: 4fak A:1-159 [195224]
   Other proteins in same PDB: d4faka2
   automated match to d1vh0a_
   protein/RNA complex; complexed with pg4, po4, sam

Details for d4faka1

PDB Entry: 4fak, 1.7 Å

PDB Description: Crystal Structure of OrfX in Complex with S-Adenosylmethionine

PDB Compounds: (A:) Ribosomal RNA large subunit methyltransferase H

SCOPe Domain Sequences for d4faka1:

Sequence; same for both SEQRES and ATOM records:

>d4faka1 c.116.1.3 (A:1-159) automated matches {Staphylococcus aureus [TaxId: 1280]}
mkitilavgklkekywkqaiaeyekrlgpytkidiievpdekapenmsdkeieqvkekeg
qrilakikpqstvitleiqgkmlsseglaqelnqrmtqgqsdfvfviggsnglhkdvlqr
snyalsfskmtfphqmmrvvlieqvyrafkimrgeayhk

Timeline for d4faka1:

• d4faka1 first appeared in SCOPe 2.02, called d4faka_
  
• d4faka1 appears in SCOPe 2.07