Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2170735Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2192663Fold d.58: Ferredoxin-like [54861] (59 superfamilies)
    alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
  4. 2198653Superfamily d.58.56: CcmK-like [143414] (2 families) (S)
    contains extra C-terminal helix; forms compact hexameric 'tiles' of hexagonal shape
  5. 2198733Family d.58.56.0: automated matches [195116] (1 protein)
    not a true family
  6. 2198734Protein automated matches [195117] (12 species)
    not a true protein

Species:

  1. 2198735Aeromonas hydrophila [TaxId:380703] [275924] (1 PDB entry)
  2. 2198739Citrobacter freundii [TaxId:546] [257443] (3 PDB entries)
    1. Domains for 3pac:
      1. 2198746Domain d3paca1: 3pac A:2-94 [306224]
        automated match to d4qiva_
      2. 2198747Domain d3paca2: 3pac A:95-184 [306225]
        automated match to d4qiva_
    2. Domains for 4p7t:
      1. 2198740Domain d4p7ta_: 4p7t A: [257444]
        automated match to d3mpya_
      2. 2198741Domain d4p7tb_: 4p7t B: [263448]
        automated match to d4ppda_
      3. 2198742Domain d4p7tc_: 4p7t C: [263449]
        automated match to d4ppda_
      4. 2198743Domain d4p7td_: 4p7t D: [263450]
        automated match to d4ppda_
      5. 2198744Domain d4p7te_: 4p7t E: [259912]
        automated match to d3mpya_
      6. 2198745Domain d4p7tf_: 4p7t F: [263451]
        automated match to d4ppda_
    3. Domains for 4p7v:
      1. 2198748Domain d4p7va_: 4p7v A: [257445]
        automated match to d3mpya_
        complexed with gol
      2. 2198749Domain d4p7vb_: 4p7v B: [263452]
        automated match to d4ppda_
        complexed with gol
      3. 2198750Domain d4p7vc_: 4p7v C: [263453]
        automated match to d4ppda_
        complexed with gol
      4. 2198751Domain d4p7vd_: 4p7v D: [259911]
        automated match to d3mpya_
        complexed with gol
      5. 2198752Domain d4p7ve_: 4p7v E: [263454]
        automated match to d4ppda_
        complexed with gol
      6. 2198753Domain d4p7vf_: 4p7v F: [263455]
        automated match to d4ppda_
        complexed with gol
  3. 2198754Clostridium difficile [TaxId:272563] [195118] (1 PDB entry)
  4. 2198758Desulfitobacterium hafniense [TaxId:272564] [340495] (1 PDB entry)
  5. 2198761Escherichia coli K-12 [TaxId:83333] [225811] (3 PDB entries)
    1. Domains for 3i6p:
      1. 2198763Domain d3i6pa_: 3i6p A: [211534]
        automated match to d2a10d_
        complexed with so4
      2. 2198764Domain d3i6pb_: 3i6p B: [211535]
        automated match to d2a10d_
        complexed with so4
      3. 2198765Domain d3i6pc_: 3i6p C: [211536]
        automated match to d2a10d_
        complexed with so4
      4. 2198766Domain d3i6pd_: 3i6p D: [211537]
        automated match to d2a10d_
        complexed with so4
      5. 2198767Domain d3i6pe_: 3i6p E: [211538]
        automated match to d2a10d_
        complexed with so4
      6. 2198768Domain d3i6pf_: 3i6p F: [211539]
        automated match to d2a10d_
        complexed with so4
    2. Domains for 3mpw:
      1. 2198769Domain d3mpwa1: 3mpw A:2-97 [213543]
        Other proteins in same PDB: d3mpwa2, d3mpwb2, d3mpwg2
        automated match to d2a10b_
        complexed with po4
      2. 2198770Domain d3mpwb1: 3mpw B:2-97 [213544]
        Other proteins in same PDB: d3mpwa2, d3mpwb2, d3mpwg2
        automated match to d2a10b_
        complexed with po4
      3. 2198771Domain d3mpwc_: 3mpw C: [213545]
        Other proteins in same PDB: d3mpwa2, d3mpwb2, d3mpwg2
        automated match to d2a10b_
        complexed with po4
      4. 2198772Domain d3mpwd_: 3mpw D: [213546]
        Other proteins in same PDB: d3mpwa2, d3mpwb2, d3mpwg2
        automated match to d2a10b_
        complexed with po4
      5. 2198773Domain d3mpwe_: 3mpw E: [213547]
        Other proteins in same PDB: d3mpwa2, d3mpwb2, d3mpwg2
        automated match to d2a10b_
        complexed with po4
      6. 2198774Domain d3mpwf_: 3mpw F: [213548]
        Other proteins in same PDB: d3mpwa2, d3mpwb2, d3mpwg2
        automated match to d2a10b_
        complexed with po4
      7. 2198775Domain d3mpwg1: 3mpw G:2-97 [213549]
        Other proteins in same PDB: d3mpwa2, d3mpwb2, d3mpwg2
        automated match to d2a10b_
        complexed with po4
      8. 2198776Domain d3mpwh_: 3mpw H: [213550]
        Other proteins in same PDB: d3mpwa2, d3mpwb2, d3mpwg2
        automated match to d2a10b_
        complexed with po4
      9. 2198777Domain d3mpwi_: 3mpw I: [213551]
        Other proteins in same PDB: d3mpwa2, d3mpwb2, d3mpwg2
        automated match to d2a10b_
        complexed with po4
      10. 2198778Domain d3mpwj_: 3mpw J: [213552]
        Other proteins in same PDB: d3mpwa2, d3mpwb2, d3mpwg2
        automated match to d2a10b_
        complexed with po4
      11. 2198779Domain d3mpwk_: 3mpw K: [213553]
        Other proteins in same PDB: d3mpwa2, d3mpwb2, d3mpwg2
        automated match to d2a10b_
        complexed with po4
      12. 2198780Domain d3mpwl_: 3mpw L: [213554]
        Other proteins in same PDB: d3mpwa2, d3mpwb2, d3mpwg2
        automated match to d2a10b_
        complexed with po4
    3. Domain for 3mpy:
  6. 2198781Haliangium ochraceum [TaxId:502025] [279894] (1 PDB entry)
  7. 2198790Mycobacterium smegmatis [TaxId:246196] [329259] (1 PDB entry)
  8. 2198803Prochlorococcus marinus [TaxId:74547] [259233] (1 PDB entry)
  9. 2198810Salmonella enterica [TaxId:702982] [257392] (1 PDB entry)
  10. 2198820Salmonella enterica [TaxId:90371] [225986] (2 PDB entries)
    1. Domains for 3n79:
      1. 2198821Domain d3n79a1: 3n79 A:2-94 [306021]
        automated match to d4qiva_
        complexed with cl, na, so4; mutant
      2. 2198822Domain d3n79a2: 3n79 A:95-184 [306022]
        automated match to d4qiva_
        complexed with cl, na, so4; mutant
    2. Domain for 3ngk:
  11. 2198824Salmonella enterica [TaxId:99287] [257522] (6 PDB entries)
    1. Domains for 4ppd:
      1. 2198834Domain d4ppda_: 4ppd A: [257523]
        Other proteins in same PDB: d4ppdb2
        automated match to d2a10d_
        complexed with gol, so4
      2. 2198835Domain d4ppdb1: 4ppd B:2-90 [263561]
        Other proteins in same PDB: d4ppdb2
        automated match to d4ppda_
        complexed with gol, so4
      3. 2198836Domain d4ppdc_: 4ppd C: [263562]
        Other proteins in same PDB: d4ppdb2
        automated match to d4ppda_
        complexed with gol, so4
      4. 2198837Domain d4ppdd_: 4ppd D: [263563]
        Other proteins in same PDB: d4ppdb2
        automated match to d4ppda_
        complexed with gol, so4
      5. 2198838Domain d4ppde_: 4ppd E: [263564]
        Other proteins in same PDB: d4ppdb2
        automated match to d4ppda_
        complexed with gol, so4
      6. 2198839Domain d4ppdf_: 4ppd F: [263565]
        Other proteins in same PDB: d4ppdb2
        automated match to d4ppda_
        complexed with gol, so4
      7. 2198840Domain d4ppdg_: 4ppd G: [263566]
        Other proteins in same PDB: d4ppdb2
        automated match to d4ppda_
        complexed with gol, so4
    2. Domains for 4qie:
      1. 2198844Domain d4qiea_: 4qie A: [273649]
        Other proteins in same PDB: d4qieh2
        automated match to d2a10f_
        complexed with gol, so4; mutant
      2. 2198845Domain d4qieb_: 4qie B: [273645]
        Other proteins in same PDB: d4qieh2
        automated match to d2a10f_
        complexed with gol, so4; mutant
      3. 2198846Domain d4qiec_: 4qie C: [273644]
        Other proteins in same PDB: d4qieh2
        automated match to d2a10f_
        complexed with gol, so4; mutant
      4. 2198847Domain d4qied_: 4qie D: [273647]
        Other proteins in same PDB: d4qieh2
        automated match to d2a10f_
        complexed with gol, so4; mutant
      5. 2198848Domain d4qiee_: 4qie E: [273651]
        Other proteins in same PDB: d4qieh2
        automated match to d2a10f_
        complexed with gol, so4; mutant
      6. 2198849Domain d4qief_: 4qie F: [273652]
        Other proteins in same PDB: d4qieh2
        automated match to d2a10f_
        complexed with gol, so4; mutant
      7. 2198850Domain d4qieg_: 4qie G: [273650]
        Other proteins in same PDB: d4qieh2
        automated match to d2a10f_
        complexed with gol, so4; mutant
      8. 2198851Domain d4qieh1: 4qie H:2-89 [273646]
        Other proteins in same PDB: d4qieh2
        automated match to d2a10f_
        complexed with gol, so4; mutant
      9. 2198852Domain d4qiei_: 4qie I: [273648]
        Other proteins in same PDB: d4qieh2
        automated match to d2a10f_
        complexed with gol, so4; mutant
    3. Domains for 4qif:
      1. 2198825Domain d4qifa_: 4qif A: [269273]
        Other proteins in same PDB: d4qifh2
        automated match to d2a10f_
        complexed with gol, k, pgo, so4, tar; mutant
      2. 2198826Domain d4qifb_: 4qif B: [269276]
        Other proteins in same PDB: d4qifh2
        automated match to d2a10f_
        complexed with gol, k, pgo, so4, tar; mutant
      3. 2198827Domain d4qifc_: 4qif C: [269274]
        Other proteins in same PDB: d4qifh2
        automated match to d2a10f_
        complexed with gol, k, pgo, so4, tar; mutant
      4. 2198828Domain d4qifd_: 4qif D: [269275]
        Other proteins in same PDB: d4qifh2
        automated match to d2a10f_
        complexed with gol, k, pgo, so4, tar; mutant
      5. 2198829Domain d4qife_: 4qif E: [269279]
        Other proteins in same PDB: d4qifh2
        automated match to d2a10f_
        complexed with gol, k, pgo, so4, tar; mutant
      6. 2198830Domain d4qiff_: 4qif F: [269277]
        Other proteins in same PDB: d4qifh2
        automated match to d2a10f_
        complexed with gol, k, pgo, so4, tar; mutant
      7. 2198831Domain d4qifg_: 4qif G: [269278]
        Other proteins in same PDB: d4qifh2
        automated match to d2a10f_
        complexed with gol, k, pgo, so4, tar; mutant
      8. 2198832Domain d4qifh1: 4qif H:2-91 [269280]
        Other proteins in same PDB: d4qifh2
        automated match to d2a10f_
        complexed with gol, k, pgo, so4, tar; mutant
      9. 2198833Domain d4qifi_: 4qif I: [269285]
        Other proteins in same PDB: d4qifh2
        automated match to d2a10f_
        complexed with gol, k, pgo, so4, tar; mutant
    4. Domains for 4rbt:
      1. 2198841Domain d4rbta_: 4rbt A: [269841]
        automated match to d4ppda_
        complexed with so4; mutant
      2. 2198842Domain d4rbtb_: 4rbt B: [269840]
        automated match to d4ppda_
        complexed with so4; mutant
      3. 2198843Domain d4rbtc_: 4rbt C: [269839]
        automated match to d4ppda_
        complexed with so4; mutant
    5. Domains for 4rbu:
      1. 2198853Domain d4rbua_: 4rbu A: [269829]
        automated match to d4ppda_
        complexed with so4; mutant
      2. 2198854Domain d4rbub_: 4rbu B: [269828]
        automated match to d4ppda_
        complexed with so4; mutant
      3. 2198855Domain d4rbuc_: 4rbu C: [269825]
        automated match to d4ppda_
        complexed with so4; mutant
      4. 2198856Domain d4rbud_: 4rbu D: [269827]
        automated match to d4ppda_
        complexed with so4; mutant
      5. 2198857Domain d4rbue_: 4rbu E: [269826]
        automated match to d4ppda_
        complexed with so4; mutant
      6. 2198858Domain d4rbuf_: 4rbu F: [269832]
        automated match to d4ppda_
        complexed with so4; mutant
      7. 2198859Domain d4rbug_: 4rbu G: [269831]
        automated match to d4ppda_
        complexed with so4; mutant
      8. 2198860Domain d4rbuh_: 4rbu H: [269830]
        automated match to d4ppda_
        complexed with so4; mutant
      9. 2198861Domain d4rbui_: 4rbu I: [269833]
        automated match to d4ppda_
        complexed with so4; mutant
    6. Domains for 4rbv:
      1. 2198862Domain d4rbva_: 4rbv A: [269835]
        Other proteins in same PDB: d4rbvb2
        automated match to d4ppda_
        complexed with so4; mutant
      2. 2198863Domain d4rbvb1: 4rbv B:2-94 [269837]
        Other proteins in same PDB: d4rbvb2
        automated match to d4ppda_
        complexed with so4; mutant
      3. 2198864Domain d4rbvc_: 4rbv C: [269836]
        Other proteins in same PDB: d4rbvb2
        automated match to d4ppda_
        complexed with so4; mutant
      4. 2198865Domain d4rbvd_: 4rbv D: [269838]
        Other proteins in same PDB: d4rbvb2
        automated match to d4ppda_
        complexed with so4; mutant
      5. 2198866Domain d4rbve_: 4rbv E: [269843]
        Other proteins in same PDB: d4rbvb2
        automated match to d4ppda_
        complexed with so4; mutant
      6. 2198867Domain d4rbvf_: 4rbv F: [269844]
        Other proteins in same PDB: d4rbvb2
        automated match to d4ppda_
        complexed with so4; mutant
      7. 2198868Domain d4rbvg_: 4rbv G: [269842]
        Other proteins in same PDB: d4rbvb2
        automated match to d4ppda_
        complexed with so4; mutant
  12. 2198869Salmonella typhimurium [TaxId:99287] [318903] (1 PDB entry)

More info for Protein automated matches from d.58.56.0: automated matches

Timeline for Protein automated matches from d.58.56.0: automated matches: