Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. 2923792Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. 2949054Fold d.58: Ferredoxin-like [54861] (62 superfamilies)
    alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
  4. 2955934Superfamily d.58.56: CcmK-like [143414] (2 families) (S)
    contains extra C-terminal helix; forms compact hexameric 'tiles' of hexagonal shape
  5. 2956023Family d.58.56.0: automated matches [195116] (1 protein)
    not a true family
  6. 2956024Protein automated matches [195117] (13 species)
    not a true protein

Species:

  1. 2956025Aeromonas hydrophila [TaxId:380703] [275924] (1 PDB entry)
  2. 2956029Citrobacter freundii [TaxId:546] [257443] (3 PDB entries)
    1. Domains for 3pac:
      1. 2956030Domain d3paca1: 3pac A:2-94 [306224]
        automated match to d4qiva_
      2. 2956031Domain d3paca2: 3pac A:95-184 [306225]
        automated match to d4qiva_
    2. Domains for 4p7t:
      1. 2956032Domain d4p7ta_: 4p7t A: [257444]
        automated match to d3mpya_
      2. 2956033Domain d4p7tb_: 4p7t B: [263448]
        automated match to d4ppda_
      3. 2956034Domain d4p7tc_: 4p7t C: [263449]
        automated match to d4ppda_
      4. 2956035Domain d4p7td_: 4p7t D: [263450]
        automated match to d4ppda_
      5. 2956036Domain d4p7te_: 4p7t E: [259912]
        automated match to d3mpya_
      6. 2956037Domain d4p7tf_: 4p7t F: [263451]
        automated match to d4ppda_
    3. Domains for 4p7v:
      1. 2956038Domain d4p7va_: 4p7v A: [257445]
        automated match to d3mpya_
        complexed with gol
      2. 2956039Domain d4p7vb_: 4p7v B: [263452]
        automated match to d4ppda_
        complexed with gol
      3. 2956040Domain d4p7vc_: 4p7v C: [263453]
        automated match to d4ppda_
        complexed with gol
      4. 2956041Domain d4p7vd_: 4p7v D: [259911]
        automated match to d3mpya_
        complexed with gol
      5. 2956042Domain d4p7ve_: 4p7v E: [263454]
        automated match to d4ppda_
        complexed with gol
      6. 2956043Domain d4p7vf_: 4p7v F: [263455]
        automated match to d4ppda_
        complexed with gol
  3. 2956044Clostridium difficile [TaxId:272563] [195118] (1 PDB entry)
  4. 2956048Desulfitobacterium hafniense [TaxId:272564] [340495] (1 PDB entry)
  5. 2956051Escherichia coli K-12 [TaxId:83333] [225811] (3 PDB entries)
    1. Domains for 3i6p:
      1. 2956053Domain d3i6pa_: 3i6p A: [211534]
        automated match to d2a10d_
        complexed with so4
      2. 2956054Domain d3i6pb_: 3i6p B: [211535]
        automated match to d2a10d_
        complexed with so4
      3. 2956055Domain d3i6pc_: 3i6p C: [211536]
        automated match to d2a10d_
        complexed with so4
      4. 2956056Domain d3i6pd_: 3i6p D: [211537]
        automated match to d2a10d_
        complexed with so4
      5. 2956057Domain d3i6pe_: 3i6p E: [211538]
        automated match to d2a10d_
        complexed with so4
      6. 2956058Domain d3i6pf_: 3i6p F: [211539]
        automated match to d2a10d_
        complexed with so4
    2. Domains for 3mpw:
      1. 2956059Domain d3mpwa1: 3mpw A:2-97 [213543]
        Other proteins in same PDB: d3mpwa2, d3mpwb2, d3mpwg2
        automated match to d2a10b_
        complexed with po4
      2. 2956060Domain d3mpwb1: 3mpw B:2-97 [213544]
        Other proteins in same PDB: d3mpwa2, d3mpwb2, d3mpwg2
        automated match to d2a10b_
        complexed with po4
      3. 2956061Domain d3mpwc_: 3mpw C: [213545]
        Other proteins in same PDB: d3mpwa2, d3mpwb2, d3mpwg2
        automated match to d2a10b_
        complexed with po4
      4. 2956062Domain d3mpwd_: 3mpw D: [213546]
        Other proteins in same PDB: d3mpwa2, d3mpwb2, d3mpwg2
        automated match to d2a10b_
        complexed with po4
      5. 2956063Domain d3mpwe_: 3mpw E: [213547]
        Other proteins in same PDB: d3mpwa2, d3mpwb2, d3mpwg2
        automated match to d2a10b_
        complexed with po4
      6. 2956064Domain d3mpwf_: 3mpw F: [213548]
        Other proteins in same PDB: d3mpwa2, d3mpwb2, d3mpwg2
        automated match to d2a10b_
        complexed with po4
      7. 2956065Domain d3mpwg1: 3mpw G:2-97 [213549]
        Other proteins in same PDB: d3mpwa2, d3mpwb2, d3mpwg2
        automated match to d2a10b_
        complexed with po4
      8. 2956066Domain d3mpwh_: 3mpw H: [213550]
        Other proteins in same PDB: d3mpwa2, d3mpwb2, d3mpwg2
        automated match to d2a10b_
        complexed with po4
      9. 2956067Domain d3mpwi_: 3mpw I: [213551]
        Other proteins in same PDB: d3mpwa2, d3mpwb2, d3mpwg2
        automated match to d2a10b_
        complexed with po4
      10. 2956068Domain d3mpwj_: 3mpw J: [213552]
        Other proteins in same PDB: d3mpwa2, d3mpwb2, d3mpwg2
        automated match to d2a10b_
        complexed with po4
      11. 2956069Domain d3mpwk_: 3mpw K: [213553]
        Other proteins in same PDB: d3mpwa2, d3mpwb2, d3mpwg2
        automated match to d2a10b_
        complexed with po4
      12. 2956070Domain d3mpwl_: 3mpw L: [213554]
        Other proteins in same PDB: d3mpwa2, d3mpwb2, d3mpwg2
        automated match to d2a10b_
        complexed with po4
    3. Domain for 3mpy:
  6. 2956071Haliangium ochraceum [TaxId:502025] [279894] (3 PDB entries)
    1. Domains for 5dih:
      1. 2956088Domain d5diha1: 5dih A:3-116 [409958]
        automated match to d5dihd1
      2. 2956089Domain d5diha2: 5dih A:119-205 [409959]
        automated match to d5diib2
      3. 2956090Domain d5dihd1: 5dih D:18-114 [345585]
        automated match to d3nwga1
      4. 2956091Domain d5dihd2: 5dih D:119-205 [345586]
        automated match to d3nwga2
      5. 2956092Domain d5dihf1: 5dih F:6-112 [345587]
        automated match to d3nwga1
      6. 2956093Domain d5dihf2: 5dih F:119-205 [345588]
        automated match to d3nwga2
    2. Domains for 5dii:
      1. 2956072Domain d5diib1: 5dii B:6-114 [345589]
        automated match to d3nwga1
        complexed with sf4
      2. 2956073Domain d5diib2: 5dii B:119-205 [345590]
        automated match to d3nwga2
        complexed with sf4
      3. 2956074Domain d5diid1: 5dii D:4-114 [409960]
        automated match to d5dihd1
        complexed with sf4
      4. 2956075Domain d5diid2: 5dii D:115-205 [409961]
        automated match to d5diib2
        complexed with sf4
      5. 2956076Domain d5diie1: 5dii E:7-114 [345591]
        automated match to d3nwga1
        complexed with sf4
      6. 2956077Domain d5diie2: 5dii E:119-205 [345592]
        automated match to d3nwga2
        complexed with sf4
      7. 2956078Domain d5diif1: 5dii F:5-114 [409962]
        automated match to d5dihd1
        complexed with sf4
      8. 2956079Domain d5diif2: 5dii F:119-205 [409963]
        automated match to d5diib2
        complexed with sf4
    3. Domains for 5djb:
      1. 2956080Domain d5djba_: 5djb A: [279895]
        automated match to d4axja_
      2. 2956081Domain d5djbb_: 5djb B: [279901]
        automated match to d4axja_
      3. 2956082Domain d5djbc_: 5djb C: [279900]
        automated match to d4axja_
      4. 2956083Domain d5djbd_: 5djb D: [279897]
        automated match to d4axja_
      5. 2956084Domain d5djbe_: 5djb E: [279898]
        automated match to d4axja_
      6. 2956085Domain d5djbf_: 5djb F: [279899]
        automated match to d4axja_
      7. 2956086Domain d5djbg_: 5djb G: [279903]
        automated match to d4axja_
      8. 2956087Domain d5djbh_: 5djb H: [279902]
        automated match to d4axja_
  7. 2956094Mycobacterium smegmatis [TaxId:246196] [329259] (1 PDB entry)
  8. 2956107Prochlorococcus marinus [TaxId:74547] [259233] (1 PDB entry)
  9. 2956114Salmonella enterica [TaxId:702982] [257392] (1 PDB entry)
  10. 2956124Salmonella enterica [TaxId:90371] [225986] (2 PDB entries)
    1. Domains for 3n79:
      1. 2956125Domain d3n79a1: 3n79 A:2-94 [306021]
        automated match to d4qiva_
        complexed with cl, na, so4; mutant
      2. 2956126Domain d3n79a2: 3n79 A:95-184 [306022]
        automated match to d4qiva_
        complexed with cl, na, so4; mutant
    2. Domain for 3ngk:
  11. 2956128Salmonella enterica [TaxId:99287] [257522] (6 PDB entries)
    1. Domains for 4ppd:
      1. 2956138Domain d4ppda_: 4ppd A: [257523]
        Other proteins in same PDB: d4ppdb2
        automated match to d2a10d_
        complexed with gol, so4
      2. 2956139Domain d4ppdb1: 4ppd B:2-90 [263561]
        Other proteins in same PDB: d4ppdb2
        automated match to d4ppda_
        complexed with gol, so4
      3. 2956140Domain d4ppdc_: 4ppd C: [263562]
        Other proteins in same PDB: d4ppdb2
        automated match to d4ppda_
        complexed with gol, so4
      4. 2956141Domain d4ppdd_: 4ppd D: [263563]
        Other proteins in same PDB: d4ppdb2
        automated match to d4ppda_
        complexed with gol, so4
      5. 2956142Domain d4ppde_: 4ppd E: [263564]
        Other proteins in same PDB: d4ppdb2
        automated match to d4ppda_
        complexed with gol, so4
      6. 2956143Domain d4ppdf_: 4ppd F: [263565]
        Other proteins in same PDB: d4ppdb2
        automated match to d4ppda_
        complexed with gol, so4
      7. 2956144Domain d4ppdg_: 4ppd G: [263566]
        Other proteins in same PDB: d4ppdb2
        automated match to d4ppda_
        complexed with gol, so4
    2. Domains for 4qie:
      1. 2956148Domain d4qiea_: 4qie A: [273649]
        Other proteins in same PDB: d4qieh2
        automated match to d2a10f_
        complexed with gol, so4; mutant
      2. 2956149Domain d4qieb_: 4qie B: [273645]
        Other proteins in same PDB: d4qieh2
        automated match to d2a10f_
        complexed with gol, so4; mutant
      3. 2956150Domain d4qiec_: 4qie C: [273644]
        Other proteins in same PDB: d4qieh2
        automated match to d2a10f_
        complexed with gol, so4; mutant
      4. 2956151Domain d4qied_: 4qie D: [273647]
        Other proteins in same PDB: d4qieh2
        automated match to d2a10f_
        complexed with gol, so4; mutant
      5. 2956152Domain d4qiee_: 4qie E: [273651]
        Other proteins in same PDB: d4qieh2
        automated match to d2a10f_
        complexed with gol, so4; mutant
      6. 2956153Domain d4qief_: 4qie F: [273652]
        Other proteins in same PDB: d4qieh2
        automated match to d2a10f_
        complexed with gol, so4; mutant
      7. 2956154Domain d4qieg_: 4qie G: [273650]
        Other proteins in same PDB: d4qieh2
        automated match to d2a10f_
        complexed with gol, so4; mutant
      8. 2956155Domain d4qieh1: 4qie H:2-89 [273646]
        Other proteins in same PDB: d4qieh2
        automated match to d2a10f_
        complexed with gol, so4; mutant
      9. 2956156Domain d4qiei_: 4qie I: [273648]
        Other proteins in same PDB: d4qieh2
        automated match to d2a10f_
        complexed with gol, so4; mutant
    3. Domains for 4qif:
      1. 2956129Domain d4qifa_: 4qif A: [269273]
        Other proteins in same PDB: d4qifh2
        automated match to d2a10f_
        complexed with gol, k, pgo, so4, tar; mutant
      2. 2956130Domain d4qifb_: 4qif B: [269276]
        Other proteins in same PDB: d4qifh2
        automated match to d2a10f_
        complexed with gol, k, pgo, so4, tar; mutant
      3. 2956131Domain d4qifc_: 4qif C: [269274]
        Other proteins in same PDB: d4qifh2
        automated match to d2a10f_
        complexed with gol, k, pgo, so4, tar; mutant
      4. 2956132Domain d4qifd_: 4qif D: [269275]
        Other proteins in same PDB: d4qifh2
        automated match to d2a10f_
        complexed with gol, k, pgo, so4, tar; mutant
      5. 2956133Domain d4qife_: 4qif E: [269279]
        Other proteins in same PDB: d4qifh2
        automated match to d2a10f_
        complexed with gol, k, pgo, so4, tar; mutant
      6. 2956134Domain d4qiff_: 4qif F: [269277]
        Other proteins in same PDB: d4qifh2
        automated match to d2a10f_
        complexed with gol, k, pgo, so4, tar; mutant
      7. 2956135Domain d4qifg_: 4qif G: [269278]
        Other proteins in same PDB: d4qifh2
        automated match to d2a10f_
        complexed with gol, k, pgo, so4, tar; mutant
      8. 2956136Domain d4qifh1: 4qif H:2-91 [269280]
        Other proteins in same PDB: d4qifh2
        automated match to d2a10f_
        complexed with gol, k, pgo, so4, tar; mutant
      9. 2956137Domain d4qifi_: 4qif I: [269285]
        Other proteins in same PDB: d4qifh2
        automated match to d2a10f_
        complexed with gol, k, pgo, so4, tar; mutant
    4. Domains for 4rbt:
      1. 2956145Domain d4rbta_: 4rbt A: [269841]
        automated match to d4ppda_
        complexed with so4; mutant
      2. 2956146Domain d4rbtb_: 4rbt B: [269840]
        automated match to d4ppda_
        complexed with so4; mutant
      3. 2956147Domain d4rbtc_: 4rbt C: [269839]
        automated match to d4ppda_
        complexed with so4; mutant
    5. Domains for 4rbu:
      1. 2956157Domain d4rbua_: 4rbu A: [269829]
        automated match to d4ppda_
        complexed with so4; mutant
      2. 2956158Domain d4rbub_: 4rbu B: [269828]
        automated match to d4ppda_
        complexed with so4; mutant
      3. 2956159Domain d4rbuc_: 4rbu C: [269825]
        automated match to d4ppda_
        complexed with so4; mutant
      4. 2956160Domain d4rbud_: 4rbu D: [269827]
        automated match to d4ppda_
        complexed with so4; mutant
      5. 2956161Domain d4rbue_: 4rbu E: [269826]
        automated match to d4ppda_
        complexed with so4; mutant
      6. 2956162Domain d4rbuf_: 4rbu F: [269832]
        automated match to d4ppda_
        complexed with so4; mutant
      7. 2956163Domain d4rbug_: 4rbu G: [269831]
        automated match to d4ppda_
        complexed with so4; mutant
      8. 2956164Domain d4rbuh_: 4rbu H: [269830]
        automated match to d4ppda_
        complexed with so4; mutant
      9. 2956165Domain d4rbui_: 4rbu I: [269833]
        automated match to d4ppda_
        complexed with so4; mutant
    6. Domains for 4rbv:
      1. 2956166Domain d4rbva_: 4rbv A: [269835]
        Other proteins in same PDB: d4rbvb2
        automated match to d4ppda_
        complexed with so4; mutant
      2. 2956167Domain d4rbvb1: 4rbv B:2-94 [269837]
        Other proteins in same PDB: d4rbvb2
        automated match to d4ppda_
        complexed with so4; mutant
      3. 2956168Domain d4rbvc_: 4rbv C: [269836]
        Other proteins in same PDB: d4rbvb2
        automated match to d4ppda_
        complexed with so4; mutant
      4. 2956169Domain d4rbvd_: 4rbv D: [269838]
        Other proteins in same PDB: d4rbvb2
        automated match to d4ppda_
        complexed with so4; mutant
      5. 2956170Domain d4rbve_: 4rbv E: [269843]
        Other proteins in same PDB: d4rbvb2
        automated match to d4ppda_
        complexed with so4; mutant
      6. 2956171Domain d4rbvf_: 4rbv F: [269844]
        Other proteins in same PDB: d4rbvb2
        automated match to d4ppda_
        complexed with so4; mutant
      7. 2956172Domain d4rbvg_: 4rbv G: [269842]
        Other proteins in same PDB: d4rbvb2
        automated match to d4ppda_
        complexed with so4; mutant
  12. 2956173Salmonella typhimurium [TaxId:99287] [318903] (1 PDB entry)
  13. 3085708Escherichia coli [TaxId:562] [422025] (1 PDB entry)

More info for Protein automated matches from d.58.56.0: automated matches

Timeline for Protein automated matches from d.58.56.0: automated matches: