SCOPe 2.05: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.05
Class f: Membrane and cell surface proteins and peptides [56835] (57 folds)
Fold f.1: Toxins' membrane translocation domains [56836] (5 superfamilies)
multi-helical domains of various folds which is thought to unfold in the membrane
Superfamily f.1.4: Bcl-2 inhibitors of programmed cell death [56854] (2 families)
PROVISIONAL CLASSIFICATION, based on structural similarity to the diphtheria toxin domain
Family f.1.4.0: automated matches [195065] (1 protein)
not a true family
Protein automated matches [195066] (3 species)
not a true protein

Species:

Human (Homo sapiens) [TaxId:9606] [225196] (8 PDB entries)
1. Domain for 2ims:
  - Domain d2imsa_: 2ims A: [204827]
    automated match to d4aq3b_
    complexed with zn
2. Domain for 2imt:
  - Domain d2imta_: 2imt A: [204828]
    automated match to d4aq3b_
    complexed with zn
3. Domain for 2jcn:
  - Domain d2jcna_: 2jcn A: [205017]
    automated match to d4aq3b_
    complexed with so4
4. Domain for 2vm6:
  - Domain d2vm6a_: 2vm6 A: [231342]
    automated match to d2voia_
    complexed with so4
5. Domain for 2yv6:
  - Domain d2yv6a_: 2yv6 A: [207722]
    automated match to d4aq3b_
    complexed with so4
6. Domains for 4bd7:
  1. Domain d4bd7a_: 4bd7 A: [234150]
    automated match to d2yv6a_
    complexed with cl, pr
  2. Domain d4bd7b_: 4bd7 B: [240007]
    automated match to d4bd7a_
    complexed with cl, pr
  3. Domain d4bd7c_: 4bd7 C: [234151]
    automated match to d2yv6a_
    complexed with cl, pr
  4. Domain d4bd7d_: 4bd7 D: [234152]
    automated match to d2yv6a_
    complexed with cl, pr
7. Domains for 4bd8:
  1. Domain d4bd8a_: 4bd8 A: [251206]
    automated match to d4bd7a_
    complexed with edo, pr
  2. Domain d4bd8b_: 4bd8 B: [251207]
    automated match to d4bd7a_
    complexed with edo, pr
  3. Domain d4bd8c_: 4bd8 C: [251208]
    automated match to d4bd7a_
    complexed with edo, pr
  4. Domain d4bd8d_: 4bd8 D: [251209]
    automated match to d4bd7a_
    complexed with edo, pr
8. Domains for 4u2u:
  1. Domain d4u2ua_: 4u2u A: [260062]
    automated match to d2imta_
  2. Domain d4u2ub_: 4u2u B: [259549]
    automated match to d2imta_
Jellyfish (Aequorea victoria) [TaxId:6100] [267921] (1 PDB entry)
- Domains for 4bdu:
  1. Domain d4bdua2: 4bdu A:1054-1122 [265922]
    Other proteins in same PDB: d4bdua1, d4bdub1, d4bduc1, d4bdud1
    automated match to d4bdud2
  2. Domain d4bdub2: 4bdu B:1054-1122 [265924]
    Other proteins in same PDB: d4bdua1, d4bdub1, d4bduc1, d4bdud1
    automated match to d4bdud2
  3. Domain d4bduc2: 4bdu C:1054-1122 [265926]
    Other proteins in same PDB: d4bdua1, d4bdub1, d4bduc1, d4bdud1
    automated match to d4bdud2
  4. Domain d4bdud2: 4bdu D:1054-1122 [265928]
    Other proteins in same PDB: d4bdua1, d4bdub1, d4bduc1, d4bdud1
    automated match to d4bd7a_
Mouse (Mus musculus) [TaxId:10090] [195067] (4 PDB entries)
1. Domains for 2vof:
  1. Domain d2vofa_: 2vof A: [206401]
    automated match to d2voia_
    complexed with cl
  2. Domain d2vofc_: 2vof C: [206402]
    automated match to d2voia_
    complexed with cl
2. Domain for 2vog:
  - Domain d2voga_: 2vog A: [206403]
    automated match to d2voia_
    complexed with cl
3. Domain for 2voh:
  - Domain d2voha_: 2voh A: [206404]
    automated match to d2voia_
    complexed with cit, so4
4. Domain for 2voi:
  - Domain d2voia_: 2voi A: [195068]
    automated match to d2yj1a_
    complexed with cl

More info for Protein automated matches from f.1.4.0: automated matches

Timeline for Protein automated matches from f.1.4.0: automated matches:

Protein automated matches from f.1.4.0: automated matches first appeared in SCOPe 2.02
Protein automated matches from f.1.4.0: automated matches appears in SCOPe 2.04
Protein automated matches from f.1.4.0: automated matches appears in SCOPe 2.06
Protein automated matches from f.1.4.0: automated matches appears in the current release, SCOPe 2.08