Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. 3021034Class f: Membrane and cell surface proteins and peptides [56835] (69 folds)
  3. 3021035Fold f.1: Toxins' membrane translocation domains [56836] (5 superfamilies)
    multi-helical domains of various folds which is thought to unfold in the membrane
  4. 3021129Superfamily f.1.4: Bcl-2 inhibitors of programmed cell death [56854] (2 families) (S)
    PROVISIONAL CLASSIFICATION, based on structural similarity to the diphtheria toxin domain
  5. 3021541Family f.1.4.0: automated matches [195065] (1 protein)
    not a true family
  6. 3021542Protein automated matches [195066] (5 species)
    not a true protein

Species:

  1. 3021543Chicken (Gallus gallus) [TaxId:9031] [348036] (1 PDB entry)
  2. 3021546Human (Homo sapiens) [TaxId:9606] [225196] (14 PDB entries)
    1. Domain for 2ims:
    2. Domain for 2imt:
    3. Domain for 2jcn:
    4. Domain for 2vm6:
    5. Domain for 2yv6:
    6. Domains for 4bd7:
      1. 3021561Domain d4bd7a_: 4bd7 A: [234150]
        automated match to d2yv6a_
        complexed with cl, pr
      2. 3021562Domain d4bd7b_: 4bd7 B: [240007]
        automated match to d4bd7a_
        complexed with cl, pr
      3. 3021563Domain d4bd7c_: 4bd7 C: [234151]
        automated match to d2yv6a_
        complexed with cl, pr
      4. 3021564Domain d4bd7d_: 4bd7 D: [234152]
        automated match to d2yv6a_
        complexed with cl, pr
    7. Domains for 4bd8:
      1. 3021553Domain d4bd8a_: 4bd8 A: [251206]
        automated match to d4bd7a_
        complexed with edo, pr
      2. 3021554Domain d4bd8b_: 4bd8 B: [251207]
        automated match to d4bd7a_
        complexed with edo, pr
      3. 3021555Domain d4bd8c_: 4bd8 C: [251208]
        automated match to d4bd7a_
        complexed with edo, pr
      4. 3021556Domain d4bd8d_: 4bd8 D: [251209]
        automated match to d4bd7a_
        complexed with edo, pr
    8. Domains for 4bdu:
      1. 3021567Domain d4bdua2: 4bdu A:1054-1122 [265922]
        Other proteins in same PDB: d4bdua1, d4bdub1, d4bduc1, d4bdud1
        automated match to d4bdud2
      2. 3021568Domain d4bdub2: 4bdu B:1054-1122 [265924]
        Other proteins in same PDB: d4bdua1, d4bdub1, d4bduc1, d4bdud1
        automated match to d4bdud2
      3. 3021569Domain d4bduc2: 4bdu C:1054-1122 [265926]
        Other proteins in same PDB: d4bdua1, d4bdub1, d4bduc1, d4bdud1
        automated match to d4bdud2
      4. 3021570Domain d4bdud2: 4bdu D:1054-1122 [265928]
        Other proteins in same PDB: d4bdua1, d4bdub1, d4bduc1, d4bdud1
        automated match to d4bd7a_
    9. Domains for 4u2u:
      1. 3021565Domain d4u2ua1: 4u2u A:23-182 [260062]
        Other proteins in same PDB: d4u2ua2, d4u2ub2
        automated match to d2imta_
      2. 3021566Domain d4u2ub1: 4u2u B:23-182 [259549]
        Other proteins in same PDB: d4u2ua2, d4u2ub2
        automated match to d2imta_
    10. Domain for 5fmi:
    11. Domains for 5vx1:
      1. 3021547Domain d5vx1a1: 5vx1 A:23-183 [341760]
        Other proteins in same PDB: d5vx1a2, d5vx1b2
        automated match to d2imta_
      2. 3021548Domain d5vx1b1: 5vx1 B:23-182 [341703]
        Other proteins in same PDB: d5vx1a2, d5vx1b2
        automated match to d2imta_
    12. Domain for 5whi:
    13. Domain for 6ckv:
    14. Domain for 6vo4:
  3. 3021572Mouse (Mus musculus) [TaxId:10090] [195067] (5 PDB entries)
    1. Domains for 2vof:
      1. 3021573Domain d2vofa1: 2vof A:1-150 [206401]
        Other proteins in same PDB: d2vofa2, d2vofc2
        automated match to d2voia_
        complexed with cl
      2. 3021574Domain d2vofc1: 2vof C:1-149 [206402]
        Other proteins in same PDB: d2vofa2, d2vofc2
        automated match to d2voia_
        complexed with cl
    2. Domain for 2vog:
    3. Domain for 2voh:
    4. Domain for 2voi:
    5. Domains for 6mcy:
      1. 3021578Domain d6mcya1: 6mcy A:21-182 [374002]
        Other proteins in same PDB: d6mcya2, d6mcyb2, d6mcyc2, d6mcyd2
        automated match to d2imta_
        complexed with edo, fmt
      2. 3021579Domain d6mcyb1: 6mcy B:21-182 [373983]
        Other proteins in same PDB: d6mcya2, d6mcyb2, d6mcyc2, d6mcyd2
        automated match to d2imta_
        complexed with edo, fmt
      3. 3021580Domain d6mcyc1: 6mcy C:21-182 [373978]
        Other proteins in same PDB: d6mcya2, d6mcyb2, d6mcyc2, d6mcyd2
        automated match to d2imta_
        complexed with edo, fmt
      4. 3021581Domain d6mcyd1: 6mcy D:21-181 [373971]
        Other proteins in same PDB: d6mcya2, d6mcyb2, d6mcyc2, d6mcyd2
        automated match to d2imta_
        complexed with edo, fmt
  4. 3021582Trichuris suis [TaxId:68888] [392575] (1 PDB entry)
  5. 3021584Zebrafish (Danio rerio) [TaxId:7955] [358283] (1 PDB entry)

More info for Protein automated matches from f.1.4.0: automated matches

Timeline for Protein automated matches from f.1.4.0: automated matches: