SCOPe 2.08: Domain d4dvrg_: 4dvr G:

Lineage for d4dvrg_ (4dvr G:)

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.172: gp120 core [56501] (1 superfamily)
   unusual fold

4. Superfamily d.172.1: gp120 core [56502] (1 family)

5. Family d.172.1.1: gp120 core [56503] (2 proteins)

6. Protein gp120 core [56504] (3 species)

7. Species Human immunodeficiency virus type 1 (isolate yu2) [TaxId:362651] [346393] (1 PDB entry)

8. Domain d4dvrg_: 4dvr G: [193961]
   Other proteins in same PDB: d4dvrh1, d4dvrh2, d4dvrl1, d4dvrl2
   automated match to d3hi1g_
   complexed with 0ly, nag

Details for d4dvrg_

PDB Entry: 4dvr, 2.5 Å

PDB Description: crystal structure of yu2 gp120 core in complex with fab 48d and nbd- 557

PDB Compounds: (G:) envelope glycoprotein gp120

SCOPe Domain Sequences for d4dvrg_:

Sequence, based on SEQRES records:

>d4dvrg_ d.172.1.1 (G:) gp120 core {Human immunodeficiency virus type 1 (isolate yu2) [TaxId: 362651]}
tenfnmwknnmveqmhediislwdqslkpcvkltggsvitqacpkvsfepipihycapag
failkcndkkfngtgpctnvstvqcthgirpvvstqlllngslaeeeivirsenftnnak
tiivqlnesvvinctrpnnggsgsggdirqahcnlsktqwentleqiaiklkeqfgnnkt
iifnpssggdpeivthsfncggeffycnstqlftwndtrklnntgrnitlpcrikqiinm
wqevgkamyappirgqircssnitgllltrdggkdtngteifrpgggdmrdnwrselyky
kvvkie

Sequence, based on observed residues (ATOM records):

>d4dvrg_ d.172.1.1 (G:) gp120 core {Human immunodeficiency virus type 1 (isolate yu2) [TaxId: 362651]}
tenfnmwknnmveqmhediislwdqslkpcvkltggsvitqacpkvsfepipihycapag
failkcndkkfngtgpctnvstvqcthgirpvvstqlllngslaeeeivirsenftnnak
tiivqlnesvvinctrpnngdirqahcnlsktqwentleqiaiklkeqfgnnktiifnps
sggdpeivthsfncggeffycnstqlftwndtrnitlpcrikqiinmwqevgkamyappi
rgqircssnitgllltrdngteifrpgggdmrdnwrselykykvvkie

Timeline for d4dvrg_:

• d4dvrg_ first appeared in SCOPe 2.02
  
• d4dvrg_ appears in SCOPe 2.07