Lineage for Protein: automated matches

  1. Root: SCOPe 2.05
  2. 1886641Class d: Alpha and beta proteins (a+b) [53931] (381 folds)
  3. 1920668Fold d.104: Class II aaRS and biotin synthetases [55680] (1 superfamily)
    contains large mixed beta-sheet
  4. 1920669Superfamily d.104.1: Class II aaRS and biotin synthetases [55681] (5 families) (S)
  5. 1920670Family d.104.1.1: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain [55682] (16 proteins)
  6. 1920896Protein automated matches [193659] (5 species)
    not a true protein

Species:

  1. 1920897Campylobacter jejuni [TaxId:197] [256056] (2 PDB entries)
    1. Domains for 3rgl:
      1. 1920898Domain d3rgla_: 3rgl A: [249084]
        automated match to d1j5wa_
        protein/RNA complex; complexed with atp, gly, lmr
      2. 1920899Domain d3rglb_: 3rgl B: [249085]
        automated match to d1j5wa_
        protein/RNA complex; complexed with atp, gly, lmr
    2. Domains for 3ufg:
      1. 1920900Domain d3ufga_: 3ufg A: [250210]
        automated match to d1j5wa_
        protein/RNA complex; complexed with atp, leu
      2. 1920901Domain d3ufgb_: 3ufg B: [250211]
        automated match to d1j5wa_
        protein/RNA complex; complexed with atp, leu
  2. 1920902Campylobacter jejuni [TaxId:354242] [256055] (1 PDB entry)
  3. 1920905Escherichia coli K-12 [TaxId:83333] [227935] (6 PDB entries)
    1. Domains for 4hwo:
      1. 1920910Domain d4hwoa1: 4hwo A:242-532 [234708]
        Other proteins in same PDB: d4hwoa2, d4hwob2
        automated match to d4hwpb1
        protein/RNA complex; complexed with 409, zn
      2. 1920911Domain d4hwob1: 4hwo B:242-532 [234709]
        Other proteins in same PDB: d4hwoa2, d4hwob2
        automated match to d4hwpb1
        protein/RNA complex; complexed with 409, zn
    2. Domains for 4hwp:
      1. 1920908Domain d4hwpa1: 4hwp A:242-532 [234710]
        Other proteins in same PDB: d4hwpa2, d4hwpb2
        automated match to d4hwpb1
        protein/RNA complex; complexed with x16, zn
      2. 1920909Domain d4hwpb1: 4hwp B:242-532 [227936]
        Other proteins in same PDB: d4hwpa2, d4hwpb2
        automated match to d1qf6a4
        protein/RNA complex; complexed with x16, zn
    3. Domains for 4hwr:
      1. 1920912Domain d4hwra1: 4hwr A:241-532 [234711]
        Other proteins in same PDB: d4hwra2
        automated match to d4hwpb1
        protein/RNA complex; complexed with 1b2, zn
      2. 1920913Domain d4hwrb1: 4hwr B:242-532 [234716]
        Other proteins in same PDB: d4hwra2
        automated match to d4hwpb1
        protein/RNA complex; complexed with 1b2, zn
    4. Domains for 4hws:
      1. 1920906Domain d4hwsa1: 4hws A:242-532 [234717]
        Other proteins in same PDB: d4hwsa2, d4hwsb2
        automated match to d4hwpb1
        protein/RNA complex; complexed with 1b3, zn
      2. 1920907Domain d4hwsb1: 4hws B:242-532 [234720]
        Other proteins in same PDB: d4hwsa2, d4hwsb2
        automated match to d4hwpb1
        protein/RNA complex; complexed with 1b3, zn
    5. Domains for 4p3o:
      1. 1920916Domain d4p3oa1: 4p3o A:242-532 [269731]
        Other proteins in same PDB: d4p3oa2, d4p3ob2
        automated match to d4hwra1
        complexed with 2cr, gol, zn
      2. 1920917Domain d4p3ob1: 4p3o B:242-532 [269735]
        Other proteins in same PDB: d4p3oa2, d4p3ob2
        automated match to d4hwra1
        complexed with 2cr, gol, zn
    6. Domains for 4p3p:
      1. 1920914Domain d4p3pa1: 4p3p A:242-532 [269733]
        Other proteins in same PDB: d4p3pa2, d4p3pb2
        automated match to d4hwra1
        protein/RNA complex; complexed with 2cr, gol, zn
      2. 1920915Domain d4p3pb1: 4p3p B:242-532 [269729]
        Other proteins in same PDB: d4p3pa2, d4p3pb2
        automated match to d4hwra1
        protein/RNA complex; complexed with 2cr, gol, zn
  4. 1920918Pyrococcus abyssi [TaxId:29292] [193660] (6 PDB entries)
    1. Domains for 3p8t:
      1. 1920919Domain d3p8ta_: 3p8t A: [214699]
        automated match to d3p8vb_
      2. 1920920Domain d3p8tb_: 3p8t B: [214700]
        automated match to d3p8vb_
    2. Domains for 3p8v:
      1. 1920925Domain d3p8va_: 3p8v A: [200206]
        automated match to d3p8vb_
        complexed with asp
      2. 1920926Domain d3p8vb_: 3p8v B: [193661]
        automated match to d1nnha_
        complexed with asp
    3. Domains for 3p8y:
      1. 1920923Domain d3p8ya_: 3p8y A: [214704]
        automated match to d3p8vb_
        complexed with asn
      2. 1920924Domain d3p8yb_: 3p8y B: [214705]
        automated match to d3p8vb_
        complexed with asn
    4. Domains for 3reu:
      1. 1920927Domain d3reua_: 3reu A: [215780]
        automated match to d3p8vb_
        complexed with asp, atp, mg
      2. 1920928Domain d3reub_: 3reu B: [215781]
        automated match to d3p8vb_
        complexed with asp, atp, mg
    5. Domains for 3rex:
      1. 1920921Domain d3rexa_: 3rex A: [215786]
        automated match to d3p8vb_
        complexed with amp, mg
      2. 1920922Domain d3rexb_: 3rex B: [215787]
        automated match to d3p8vb_
        complexed with amp, mg
    6. Domains for 3rl6:
      1. 1920929Domain d3rl6a_: 3rl6 A: [215914]
        automated match to d3p8vb_
        complexed with amp, asn, mg
      2. 1920930Domain d3rl6b_: 3rl6 B: [215915]
        automated match to d3p8vb_
        complexed with amp, asn, mg
  5. 1920931Trypanosoma brucei [TaxId:999953] [237835] (1 PDB entry)

More info for Protein automated matches from d.104.1.1: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain

Timeline for Protein automated matches from d.104.1.1: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain: