Species:

1. Aquifex aeolicus [TaxId:224324] [317216] (1 PDB entry)

   • Domains for 5f5w:

     1. Domain d5f5wa_: 5f5w A: [317269] automated match to d1j5wa_ protein/RNA complex; complexed with g5a

     2. Domain d5f5wb_: 5f5w B: [317374] automated match to d1j5wa_ protein/RNA complex; complexed with g5a

     3. Domain d5f5wc_: 5f5w C: [317218] automated match to d1j5wa_ protein/RNA complex; complexed with g5a

     4. Domain d5f5wd_: 5f5w D: [317217] automated match to d1j5wa_ protein/RNA complex; complexed with g5a

     5. Domain d5f5we_: 5f5w E: [317264] automated match to d1j5wa_ protein/RNA complex; complexed with g5a

2. Campylobacter jejuni [TaxId:197] [256056] (2 PDB entries)

   1. Domains for 3rgl:

      1. Domain d3rgla1: 3rgl A:1-284 [249084] Other proteins in same PDB: d3rgla2, d3rglb2 automated match to d1j5wa_ protein/RNA complex; complexed with atp, gly, lmr

      2. Domain d3rglb1: 3rgl B:1-284 [249085] Other proteins in same PDB: d3rgla2, d3rglb2 automated match to d1j5wa_ protein/RNA complex; complexed with atp, gly, lmr

   2. Domains for 3ufg:

      1. Domain d3ufga1: 3ufg A:1-284 [250210] Other proteins in same PDB: d3ufga2, d3ufgb2 automated match to d1j5wa_ protein/RNA complex; complexed with atp, leu

      2. Domain d3ufgb1: 3ufg B:1-284 [250211] Other proteins in same PDB: d3ufga2, d3ufgb2 automated match to d1j5wa_ protein/RNA complex; complexed with atp, leu

3. Campylobacter jejuni [TaxId:354242] [256055] (1 PDB entry)

   • Domains for 3rf1:

     1. Domain d3rf1a1: 3rf1 A:1-284 [249082] Other proteins in same PDB: d3rf1a2, d3rf1b2 automated match to d1j5wa_ complexed with gol, lmr

     2. Domain d3rf1b1: 3rf1 B:1-284 [249083] Other proteins in same PDB: d3rf1a2, d3rf1b2 automated match to d1j5wa_ complexed with gol, lmr

4. Escherichia coli K-12 [TaxId:83333] [227935] (6 PDB entries)

   1. Domains for 4hwo:

      1. Domain d4hwoa1: 4hwo A:242-532 [234708] Other proteins in same PDB: d4hwoa2, d4hwoa3, d4hwob2 automated match to d4hwpb1 protein/RNA complex; complexed with 409, zn

      2. Domain d4hwob1: 4hwo B:242-532 [234709] Other proteins in same PDB: d4hwoa2, d4hwoa3, d4hwob2 automated match to d4hwpb1 protein/RNA complex; complexed with 409, zn

   2. Domains for 4hwp:

      1. Domain d4hwpa1: 4hwp A:242-532 [234710] Other proteins in same PDB: d4hwpa2, d4hwpa3, d4hwpb2 automated match to d4hwpb1 protein/RNA complex; complexed with x16, zn

      2. Domain d4hwpb1: 4hwp B:242-532 [227936] Other proteins in same PDB: d4hwpa2, d4hwpa3, d4hwpb2 automated match to d1qf6a4 protein/RNA complex; complexed with x16, zn

   3. Domains for 4hwr:

      1. Domain d4hwra1: 4hwr A:242-532 [234711] Other proteins in same PDB: d4hwra2, d4hwra3, d4hwra4 automated match to d4hwpb1 protein/RNA complex; complexed with 1b2, zn

      2. Domain d4hwrb1: 4hwr B:242-532 [234716] Other proteins in same PDB: d4hwra2, d4hwra3, d4hwra4 automated match to d4hwpb1 protein/RNA complex; complexed with 1b2, zn

   4. Domains for 4hws:

      1. Domain d4hwsa1: 4hws A:242-532 [234717] Other proteins in same PDB: d4hwsa2, d4hwsa3, d4hwsb2 automated match to d4hwpb1 protein/RNA complex; complexed with 1b3, zn

      2. Domain d4hwsb1: 4hws B:242-532 [234720] Other proteins in same PDB: d4hwsa2, d4hwsa3, d4hwsb2 automated match to d4hwpb1 protein/RNA complex; complexed with 1b3, zn

   5. Domains for 4p3o:

      1. Domain d4p3oa1: 4p3o A:242-532 [269731] Other proteins in same PDB: d4p3oa2, d4p3ob2 automated match to d4hwra1 protein/RNA complex; complexed with 2cr, gol, zn

      2. Domain d4p3ob1: 4p3o B:242-532 [269735] Other proteins in same PDB: d4p3oa2, d4p3ob2 automated match to d4hwra1 protein/RNA complex; complexed with 2cr, gol, zn

   6. Domains for 4p3p:

      1. Domain d4p3pa1: 4p3p A:242-532 [269733] Other proteins in same PDB: d4p3pa2, d4p3pb2 automated match to d4hwra1 protein/RNA complex; complexed with 2cr, gol, zn

      2. Domain d4p3pb1: 4p3p B:242-532 [269729] Other proteins in same PDB: d4p3pa2, d4p3pb2 automated match to d4hwra1 protein/RNA complex; complexed with 2cr, gol, zn

5. Pyrococcus abyssi [TaxId:29292] [193660] (6 PDB entries)

   1. Domains for 3p8t:

      1. Domain d3p8ta_: 3p8t A: [214699] automated match to d3p8vb_

      2. Domain d3p8tb_: 3p8t B: [214700] automated match to d3p8vb_

   2. Domains for 3p8v:

      1. Domain d3p8va_: 3p8v A: [200206] automated match to d3p8vb_ complexed with asp

      2. Domain d3p8vb_: 3p8v B: [193661] automated match to d1nnha_ complexed with asp

   3. Domains for 3p8y:

      1. Domain d3p8ya_: 3p8y A: [214704] automated match to d3p8vb_ complexed with asn

      2. Domain d3p8yb_: 3p8y B: [214705] automated match to d3p8vb_ complexed with asn

   4. Domains for 3reu:

      1. Domain d3reua_: 3reu A: [215780] automated match to d3p8vb_ complexed with asp, atp, mg

      2. Domain d3reub_: 3reu B: [215781] automated match to d3p8vb_ complexed with asp, atp, mg

   5. Domains for 3rex:

      1. Domain d3rexa_: 3rex A: [215786] automated match to d3p8vb_ complexed with amp, mg

      2. Domain d3rexb_: 3rex B: [215787] automated match to d3p8vb_ complexed with amp, mg

   6. Domains for 3rl6:

      1. Domain d3rl6a_: 3rl6 A: [215914] automated match to d3p8vb_ complexed with amp, asn, mg

      2. Domain d3rl6b_: 3rl6 B: [215915] automated match to d3p8vb_ complexed with amp, asn, mg

6. Salmonella enterica [TaxId:1192560] [378973] (6 PDB entries)

   1. Domains for 6l2p:

      1. Domain d6l2pa1: 6l2p A:242-532 [378993] Other proteins in same PDB: d6l2pa2, d6l2pb2, d6l2pb3 automated match to d1qf6a4 complexed with zn

      2. Domain d6l2pb1: 6l2p B:242-532 [378978] Other proteins in same PDB: d6l2pa2, d6l2pb2, d6l2pb3 automated match to d1qf6a4 complexed with zn

   2. Domains for 6l2q:

      1. Domain d6l2qa1: 6l2q A:242-532 [378974] Other proteins in same PDB: d6l2qa2, d6l2qa3, d6l2qb2, d6l2qb3 automated match to d1qf6a4 protein/RNA complex; complexed with e4o, edo, zn

      2. Domain d6l2qb1: 6l2q B:242-532 [379018] Other proteins in same PDB: d6l2qa2, d6l2qa3, d6l2qb2, d6l2qb3 automated match to d1qf6a4 protein/RNA complex; complexed with e4o, edo, zn

   3. Domains for 7cbg:

      1. Domain d7cbga1: 7cbg A:242-532 [389902] Other proteins in same PDB: d7cbga2, d7cbga3, d7cbgb2, d7cbgb3 automated match to d1qf6a4 protein/RNA complex; complexed with fql, zn

      2. Domain d7cbgb1: 7cbg B:242-532 [389973] Other proteins in same PDB: d7cbga2, d7cbga3, d7cbgb2, d7cbgb3 automated match to d1qf6a4 protein/RNA complex; complexed with fql, zn

   4. Domains for 7cbh:

      1. Domain d7cbha1: 7cbh A:242-532 [389881] Other proteins in same PDB: d7cbha2, d7cbha3, d7cbhb2, d7cbhb3 automated match to d1qf6a4 protein/RNA complex; complexed with fqr, zn

      2. Domain d7cbhb1: 7cbh B:242-532 [389888] Other proteins in same PDB: d7cbha2, d7cbha3, d7cbhb2, d7cbhb3 automated match to d1qf6a4 protein/RNA complex; complexed with fqr, zn

   5. Domains for 7cbi:

      1. Domain d7cbia1: 7cbi A:242-532 [389892] Other proteins in same PDB: d7cbia2, d7cbia3, d7cbib2, d7cbib3 automated match to d1qf6a4 protein/RNA complex; complexed with edo, fqu, gol, zn

      2. Domain d7cbib1: 7cbi B:242-532 [389950] Other proteins in same PDB: d7cbia2, d7cbia3, d7cbib2, d7cbib3 automated match to d1qf6a4 protein/RNA complex; complexed with edo, fqu, gol, zn

   6. Domains for 7wm7:

      1. Domain d7wm7b1: 7wm7 B:242-532 [422708] Other proteins in same PDB: d7wm7a2, d7wm7b2, d7wm7b3 automated match to d7cbia1 protein/RNA complex; complexed with 9i6, zn

      2. Domain d7wm7a1: 7wm7 A:242-532 [422734] Other proteins in same PDB: d7wm7a2, d7wm7b2, d7wm7b3 automated match to d7cbia1 protein/RNA complex; complexed with 9i6, zn

7. Trypanosoma brucei [TaxId:999953] [237835] (1 PDB entry)

   • Domain for 4lns:

     • Domain d4lnsa_: 4lns A: [237836] automated match to d12asa_

8. Escherichia coli [TaxId:83333] [421655] (1 PDB entry)

   • Domains for 7eiv:

     1. Domain d7eivb_: 7eiv B: [421656] automated match to d5f5wa_ complexed with anp, gly, mg

     2. Domain d7eiva_: 7eiv A: [421657] automated match to d5f5wa_ complexed with anp, gly, mg

More info for Protein automated matches from d.104.1.1: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain

Timeline for Protein automated matches from d.104.1.1: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain:

• Protein automated matches from d.104.1.1: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain first appeared in SCOPe 2.02
  
• Protein automated matches from d.104.1.1: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain appears in SCOPe 2.07