Lineage for Species: Human immunodeficiency virus [TaxId: 12721]

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2122050Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
  4. 2123751Superfamily c.55.3: Ribonuclease H-like [53098] (15 families) (S)
    consists of one domain of this fold
  5. 2124026Family c.55.3.2: Retroviral integrase, catalytic domain [53107] (2 protein domains)
  6. 2124148Protein automated matches [190209] (5 species)
    not a true protein
  7. 2124273Species Human immunodeficiency virus [TaxId:12721] [193331] (20 PDB entries)

PDB entries in Species: Human immunodeficiency virus [TaxId: 12721]:

  1. Domain(s) for 3zcm:
    1. 2124290Domain d3zcma_: 3zcm A: [201285]
      automated match to d3zcmb_
      complexed with act, gol, px3, so4
    2. 2124291Domain d3zcmb_: 3zcm B: [193332]
      automated match to d1bizb_
      complexed with act, gol, px3, so4
  2. Domain(s) for 3zso:
    1. 2124276Domain d3zsoa_: 3zso A: [218432]
      automated match to d3zcmb_
      complexed with acy, na, o2n, so4
    2. 2124277Domain d3zsob_: 3zso B: [218433]
      automated match to d3zcmb_
      complexed with acy, na, o2n, so4
  3. Domain(s) for 3zsq:
    1. 2124274Domain d3zsqa_: 3zsq A: [218434]
      automated match to d3zcmb_
      complexed with acy, gol, o4n, so4
    2. 2124275Domain d3zsqb_: 3zsq B: [218435]
      automated match to d3zcmb_
      complexed with acy, gol, o4n, so4
  4. Domain(s) for 3zsr:
    1. 2124278Domain d3zsra_: 3zsr A: [218436]
      automated match to d3zcmb_
      complexed with cl, gol, o3n, so4
    2. 2124279Domain d3zsrb_: 3zsr B: [218437]
      automated match to d3zcmb_
      complexed with cl, gol, o3n, so4
  5. Domain(s) for 3zsv:
    1. 2124284Domain d3zsva_: 3zsv A: [218438]
      automated match to d3zcmb_
      complexed with acy, edo, gol, so4, zsv
    2. 2124285Domain d3zsvb_: 3zsv B: [218439]
      automated match to d3zcmb_
      complexed with acy, edo, gol, so4, zsv
  6. Domain(s) for 3zsw:
    1. 2124292Domain d3zswa_: 3zsw A: [218440]
      automated match to d3zcmb_
      complexed with acy, cl, gol, so4, thr, zsw
    2. 2124293Domain d3zswb_: 3zsw B: [218441]
      automated match to d3zcmb_
      complexed with acy, cl, gol, so4, thr, zsw
  7. Domain(s) for 3zsx:
    1. 2124300Domain d3zsxa_: 3zsx A: [218442]
      automated match to d3zcmb_
      complexed with act, edo, gol, n44, so4
    2. 2124301Domain d3zsxb_: 3zsx B: [218443]
      automated match to d3zcmb_
      complexed with act, edo, gol, n44, so4
  8. Domain(s) for 3zsy:
    1. 2124310Domain d3zsya_: 3zsy A: [218444]
      automated match to d3zcmb_
      complexed with act, om3, so4
    2. 2124311Domain d3zsyb_: 3zsy B: [218445]
      automated match to d3zcmb_
      complexed with act, om3, so4
  9. Domain(s) for 3zsz:
    1. 2124306Domain d3zsza_: 3zsz A: [218446]
      automated match to d3zcmb_
      complexed with act, cl, om2, so4
    2. 2124307Domain d3zszb_: 3zsz B: [218447]
      automated match to d3zcmb_
      complexed with act, cl, om2, so4
  10. Domain(s) for 3zt0:
    1. 2124308Domain d3zt0a_: 3zt0 A: [218448]
      automated match to d3zcmb_
      complexed with so4, zt0
    2. 2124309Domain d3zt0b_: 3zt0 B: [218449]
      automated match to d3zcmb_
      complexed with so4, zt0
  11. Domain(s) for 3zt1:
    1. 2124286Domain d3zt1a_: 3zt1 A: [218450]
      automated match to d3zcmb_
      complexed with act, edo, om1, so4
    2. 2124287Domain d3zt1b_: 3zt1 B: [218451]
      automated match to d3zcmb_
      complexed with act, edo, om1, so4
  12. Domain(s) for 3zt2:
    1. 2124282Domain d3zt2a_: 3zt2 A: [218452]
      automated match to d3zcmb_
      complexed with act, so4, zt2
    2. 2124283Domain d3zt2b_: 3zt2 B: [218453]
      automated match to d3zcmb_
      complexed with act, so4, zt2
  13. Domain(s) for 3zt3:
    1. 2124304Domain d3zt3a_: 3zt3 A: [218454]
      automated match to d3zcmb_
      complexed with acy, edo, so4, zt4
    2. 2124305Domain d3zt3b_: 3zt3 B: [218455]
      automated match to d3zcmb_
      complexed with acy, edo, so4, zt4
  14. Domain(s) for 3zt4:
    1. 2124312Domain d3zt4a_: 3zt4 A: [218456]
      automated match to d3zcmb_
      complexed with acy, edo, so4, zt2
    2. 2124313Domain d3zt4b_: 3zt4 B: [218457]
      automated match to d3zcmb_
      complexed with acy, edo, so4, zt2
  15. Domain(s) for 4ah9:
    1. 2124280Domain d4ah9a_: 4ah9 A: [218864]
      automated match to d2itga_
      complexed with 0mb, cl, edo, gol, so4, tam
    2. 2124281Domain d4ah9b_: 4ah9 B: [218865]
      automated match to d2itga_
      complexed with 0mb, cl, edo, gol, so4, tam
  16. Domain(s) for 4ahr:
    1. 2124302Domain d4ahra_: 4ahr A: [218882]
      automated match to d2itga_
      complexed with acy, gol, i2e, so4
    2. 2124303Domain d4ahrb_: 4ahr B: [218883]
      automated match to d2itga_
      complexed with acy, gol, i2e, so4
  17. Domain(s) for 4ahs:
    1. 2124298Domain d4ahsa_: 4ahs A: [218884]
      automated match to d2itga_
      complexed with act, akh, edo, gol, so4
    2. 2124299Domain d4ahsb_: 4ahs B: [218885]
      automated match to d2itga_
      complexed with act, akh, edo, gol, so4
  18. Domain(s) for 4aht:
    1. 2124288Domain d4ahta_: 4aht A: [218886]
      automated match to d2itga_
      complexed with acy, edo, q6t, so4, tam
    2. 2124289Domain d4ahtb_: 4aht B: [218887]
      automated match to d2itga_
      complexed with acy, edo, q6t, so4, tam
  19. Domain(s) for 4ahu:
    1. 2124296Domain d4ahua_: 4ahu A: [218888]
      automated match to d2itga_
      complexed with acy, cl, edo, gol, ico, so4
    2. 2124297Domain d4ahub_: 4ahu B: [218889]
      automated match to d2itga_
      complexed with acy, cl, edo, gol, ico, so4
  20. Domain(s) for 4ahv:
    1. 2124294Domain d4ahva_: 4ahv A: [218890]
      automated match to d2itga_
      complexed with acy, edo, so4, tam, z5p
    2. 2124295Domain d4ahvb_: 4ahv B: [218891]
      automated match to d2itga_
      complexed with acy, edo, so4, tam, z5p

More info for Species Human immunodeficiency virus [TaxId:12721] from c.55.3.2 automated matches

Timeline for Species Human immunodeficiency virus [TaxId:12721] from c.55.3.2 automated matches: