Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2299346Class a: All alpha proteins [46456] (289 folds)
  3. 2312408Fold a.25: Ferritin-like [47239] (6 superfamilies)
    core: 4 helices; bundle, closed, left-handed twist; 1 crossover connection
  4. 2315669Superfamily a.25.3: EsxAB dimer-like [140453] (2 families) (S)
    (hetero)dimer of alpha-hairpin subunits similar to that of the half-ferritin family; no bound metals
  5. 2315683Family a.25.3.0: automated matches [193224] (1 protein)
    not a true family
  6. 2315684Protein automated matches [193225] (4 species)
    not a true protein

Species:

  1. 2315685Bacillus anthracis [TaxId:260799] [193226] (10 PDB entries)
    1. Domains for 4ioe:
      1. 2315696Domain d4ioea_: 4ioe A: [307547]
        automated match to d4j11b_
        complexed with fmt
      2. 2315697Domain d4ioeb_: 4ioe B: [307548]
        automated match to d4j11b_
        complexed with fmt
    2. Domains for 4iog:
      1. 2315692Domain d4ioga1: 4iog A:1-85 [307549]
        Other proteins in same PDB: d4ioga2, d4iogb2, d4iogc2
        automated match to d4j11b_
      2. 2315693Domain d4iogb1: 4iog B:1-90 [307551]
        Other proteins in same PDB: d4ioga2, d4iogb2, d4iogc2
        automated match to d4j11b_
      3. 2315694Domain d4iogc1: 4iog C:1-90 [307553]
        Other proteins in same PDB: d4ioga2, d4iogb2, d4iogc2
        automated match to d4j11b_
      4. 2315695Domain d4iogd_: 4iog D: [307555]
        Other proteins in same PDB: d4ioga2, d4iogb2, d4iogc2
        automated match to d4j11b_
    3. Domains for 4iyh:
      1. 2315712Domain d4iyha_: 4iyh A: [202680]
        automated match to d4iyhd_
        complexed with act, edo, fmt, so4
      2. 2315713Domain d4iyhb_: 4iyh B: [202681]
        automated match to d4iyhd_
        complexed with act, edo, fmt, so4
      3. 2315714Domain d4iyhc_: 4iyh C: [202682]
        automated match to d4iyhd_
        complexed with act, edo, fmt, so4
      4. 2315715Domain d4iyhd_: 4iyh D: [193243]
        automated match to d3favc_
        complexed with act, edo, fmt, so4
    4. Domains for 4iyi:
      1. 2315716Domain d4iyia_: 4iyi A: [223475]
        automated match to d4iyhd_
        complexed with act, edo, so4
      2. 2315717Domain d4iyib_: 4iyi B: [223476]
        automated match to d4iyhd_
        complexed with act, edo, so4
      3. 2315718Domain d4iyic_: 4iyi C: [223477]
        automated match to d4iyhd_
        complexed with act, edo, so4
      4. 2315719Domain d4iyid_: 4iyi D: [223478]
        automated match to d4iyhd_
        complexed with act, edo, so4
    5. Domains for 4j10:
      1. 2315698Domain d4j10a_: 4j10 A: [194004]
        automated match to d3favc_
        complexed with fmt
      2. 2315699Domain d4j10b_: 4j10 B: [194005]
        automated match to d3favc_
        complexed with fmt
    6. Domains for 4j11:
      1. 2315688Domain d4j11a1: 4j11 A:1-85 [194002]
        Other proteins in same PDB: d4j11a2, d4j11b2, d4j11c2
        automated match to d3favc_
      2. 2315689Domain d4j11b1: 4j11 B:1-90 [194003]
        Other proteins in same PDB: d4j11a2, d4j11b2, d4j11c2
        automated match to d3favc_
      3. 2315690Domain d4j11c1: 4j11 C:1-90 [194006]
        Other proteins in same PDB: d4j11a2, d4j11b2, d4j11c2
        automated match to d3favc_
      4. 2315691Domain d4j11d_: 4j11 D: [194001]
        Other proteins in same PDB: d4j11a2, d4j11b2, d4j11c2
        automated match to d3favc_
    7. Domains for 4j41:
      1. 2315702Domain d4j41a1: 4j41 A:1-86 [202688]
        Other proteins in same PDB: d4j41a2
        automated match to d4j41d_
        complexed with act, fmt, peg; mutant
      2. 2315703Domain d4j41b_: 4j41 B: [202689]
        Other proteins in same PDB: d4j41a2
        automated match to d4j41d_
        complexed with act, fmt, peg; mutant
      3. 2315704Domain d4j41c_: 4j41 C: [202690]
        Other proteins in same PDB: d4j41a2
        automated match to d4j41d_
        complexed with act, fmt, peg; mutant
      4. 2315705Domain d4j41d_: 4j41 D: [193242]
        Other proteins in same PDB: d4j41a2
        automated match to d3favc_
        complexed with act, fmt, peg; mutant
      5. 2315706Domain d4j41e_: 4j41 E: [202691]
        Other proteins in same PDB: d4j41a2
        automated match to d4j41d_
        complexed with act, fmt, peg; mutant
      6. 2315707Domain d4j41f_: 4j41 F: [202692]
        Other proteins in same PDB: d4j41a2
        automated match to d4j41d_
        complexed with act, fmt, peg; mutant
    8. Domains for 4j42:
      1. 2315686Domain d4j42a_: 4j42 A: [193970]
        automated match to d3favc_
        complexed with flc, fmt; mutant
      2. 2315687Domain d4j42b_: 4j42 B: [202693]
        automated match to d4j42a_
        complexed with flc, fmt; mutant
    9. Domains for 4j7j:
      1. 2315700Domain d4j7ja1: 4j7j A:1-86 [202718]
        Other proteins in same PDB: d4j7jb2
        automated match to d4j7jb_
        complexed with gol; mutant
      2. 2315701Domain d4j7jb1: 4j7j B:1-85 [193228]
        Other proteins in same PDB: d4j7jb2
        automated match to d3favc_
        complexed with gol; mutant
    10. Domains for 4j7k:
      1. 2315708Domain d4j7ka1: 4j7k A:1-88 [202719]
        Other proteins in same PDB: d4j7ka2, d4j7kb2, d4j7kc2
        automated match to d4j7kd_
        mutant
      2. 2315709Domain d4j7kb1: 4j7k B:1-90 [202720]
        Other proteins in same PDB: d4j7ka2, d4j7kb2, d4j7kc2
        automated match to d4j7kd_
        mutant
      3. 2315710Domain d4j7kc1: 4j7k C:1-90 [202721]
        Other proteins in same PDB: d4j7ka2, d4j7kb2, d4j7kc2
        automated match to d4j7kd_
        mutant
      4. 2315711Domain d4j7kd_: 4j7k D: [193227]
        Other proteins in same PDB: d4j7ka2, d4j7kb2, d4j7kc2
        automated match to d3favc_
        mutant
  2. 2315720Staphylococcus aureus [TaxId:1280] [255623] (2 PDB entries)
    1. Domains for 2vrz:
      1. 2315723Domain d2vrza_: 2vrz A: [243931]
        automated match to d3gvmc_
        complexed with zn
      2. 2315724Domain d2vrzb_: 2vrz B: [243932]
        automated match to d3gvmc_
        complexed with zn
    2. Domains for 2vs0:
      1. 2315721Domain d2vs0a_: 2vs0 A: [243933]
        automated match to d3gvmc_
        complexed with cac, zn
      2. 2315722Domain d2vs0b_: 2vs0 B: [243934]
        automated match to d3gvmc_
        complexed with cac, zn
  3. 2315725Streptococcus agalactiae [TaxId:208435] [232336] (2 PDB entries)
    1. Domains for 3gvm:
      1. 2315728Domain d3gvma1: 3gvm A:4-95 [232337]
        Other proteins in same PDB: d3gvma2, d3gvmc2
        automated match to d4j7kb_
      2. 2315729Domain d3gvmb_: 3gvm B: [232338]
        Other proteins in same PDB: d3gvma2, d3gvmc2
        automated match to d4j7kb_
      3. 2315730Domain d3gvmc1: 3gvm C:4-96 [232339]
        Other proteins in same PDB: d3gvma2, d3gvmc2
        automated match to d4j7kb_
      4. 2315731Domain d3gvmd_: 3gvm D: [232340]
        Other proteins in same PDB: d3gvma2, d3gvmc2
        automated match to d4j7kb_
    2. Domains for 3gwk:
      1. 2315726Domain d3gwkc1: 3gwk C:4-97 [246376]
        Other proteins in same PDB: d3gwkc2, d3gwke2
        automated match to d3gvmc_
        complexed with so4
      2. 2315727Domain d3gwke1: 3gwk E:4-97 [246377]
        Other proteins in same PDB: d3gwkc2, d3gwke2
        automated match to d3gvmc_
        complexed with so4
  4. 2315732Streptococcus agalactiae [TaxId:211110] [233061] (1 PDB entry)

More info for Protein automated matches from a.25.3.0: automated matches

Timeline for Protein automated matches from a.25.3.0: automated matches: