SCOPe 2.05: Family c.2.1.0: automated matches

Lineage for Family c.2.1.0: automated matches

Root: SCOPe 2.05
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

Fold c.2: NAD(P)-binding Rossmann-fold domains [51734] (1 superfamily)
core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
The nucleotide-binding modes of this and the next two folds/superfamilies are similar

Superfamily c.2.1: NAD(P)-binding Rossmann-fold domains [51735] (13 families)
Family c.2.1.0: automated matches [191313] (1 protein)
not a true family

Protein:

automated matches [190069] (203 species)
not a true protein
1. Species Acholeplasma laidlawii [TaxId:441768] [261512] (1 PDB entry)
2. Species Acinetobacter baumannii [TaxId:405416] [226610] (1 PDB entry)
3. Species Acinetobacter baumannii [TaxId:575584] [226446] (3 PDB entries)
4. Species Acinetobacter baylyi [TaxId:202950] [226522] (3 PDB entries)
5. Species Aeromonas hydrophila [TaxId:380703] [189227] (1 PDB entry)
6. Species Aeropyrum pernix [TaxId:272557] [188386] (1 PDB entry)
7. Species Aeropyrum pernix [TaxId:56636] [225173] (1 PDB entry)
8. Species Agrobacterium fabrum [TaxId:176299] [226548] (2 PDB entries)
9. Species Agrobacterium tumefaciens [TaxId:176299] [194353] (2 PDB entries)
10. Species Agrobacterium tumefaciens [TaxId:358] [193697] (3 PDB entries)
11. Species Alfalfa (Medicago sativa) [TaxId:3879] [231113] (1 PDB entry)
12. Species Aneurinibacillus thermoaerophilus [TaxId:143495] [225432] (1 PDB entry)
13. Species Anthrax bacillus (Bacillus anthracis) [TaxId:1392] [196222] (2 PDB entries)
14. Species Aquifex aeolicus [TaxId:224324] [187981] (3 PDB entries)
15. Species Archaeoglobus fulgidus [TaxId:2234] [188631] (1 PDB entry)
16. Species Aromatoleum aromaticum [TaxId:76114] [274789] (2 PDB entries)
17. Species Arthrobacter sp. [188195] (1 PDB entry)
18. Species Arthrobacter sp. [TaxId:168809] [188194] (1 PDB entry)
19. Species Aspergillus nidulans [TaxId:227321] [256357] (1 PDB entry)
20. Species Azoarcus sp. [TaxId:76114] [187073] (1 PDB entry)
21. Species Bacillus anthracis [TaxId:198094] [189998] (3 PDB entries)
22. Species Bacillus anthracis [TaxId:261594] [196544] (4 PDB entries)
23. Species Bacillus cereus [TaxId:226900] [189455] (4 PDB entries)
24. Species Bacillus selenitireducens [TaxId:439292] [226755] (1 PDB entry)
25. Species Bacillus sp. [TaxId:161544] [229451] (1 PDB entry)
26. Species Bacillus subtilis [TaxId:1423] [196388] (11 PDB entries)
27. Species Bacillus thuringiensis [TaxId:527023] [189003] (1 PDB entry)
28. Species Bacteroides thetaiotaomicron [TaxId:818] [225965] (1 PDB entry)
29. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [225295] (2 PDB entries)
30. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [232746] (4 PDB entries)
31. Species Bartonella henselae [TaxId:283166] [196588] (1 PDB entry)
32. Species Beutenbergia cavernae [TaxId:471853] [189821] (1 PDB entry)
33. Species Bordetella bronchiseptica [TaxId:518] [225344] (8 PDB entries)
34. Species Brevibacterium saccharolyticum [TaxId:1718] [189138] (1 PDB entry)
35. Species Brucella abortus [TaxId:262698] [256370] (1 PDB entry)
36. Species Brucella melitensis [TaxId:1160220] [257516] (1 PDB entry)
37. Species Brucella melitensis [TaxId:224914] [236934] (1 PDB entry)
38. Species Brucella melitensis [TaxId:29459] [188645] (2 PDB entries)
39. Species Brucella melitensis [TaxId:359391] [189369] (3 PDB entries)
40. Species Brucella melitensis [TaxId:546272] [229171] (1 PDB entry)
41. Species Brucella ovis [TaxId:1293916] [275354] (1 PDB entry)
42. Species Brucella ovis [TaxId:444178] [269551] (3 PDB entries)
43. Species Brucella suis [TaxId:204722] [230314] (1 PDB entry)
44. Species Brucella suis [TaxId:470137] [229017] (3 PDB entries)
45. Species Burkholderia cenocepacia [TaxId:216591] [193149] (5 PDB entries)
46. Species Burkholderia multivorans [TaxId:395019] [226459] (3 PDB entries)
47. Species Burkholderia pseudomallei [TaxId:28450] [225606] (1 PDB entry)
48. Species Burkholderia pseudomallei [TaxId:320372] [188646] (5 PDB entries)
49. Species Burkholderia thailandensis [TaxId:271848] [196827] (2 PDB entries)
50. Species Campylobacter jejuni [TaxId:192222] [225997] (1 PDB entry)
51. Species Candida parapsilosis [TaxId:5480] [195408] (1 PDB entry)
52. Species Carp (Cyprinus carpio) [TaxId:7962] [224961] (1 PDB entry)
53. Species Champsocephalus gunnari [TaxId:52237] [225331] (1 PDB entry)
54. Species Citrullus lanatus [TaxId:3654] [224958] (2 PDB entries)
55. Species Cladosporium herbarum [TaxId:29918] [189335] (2 PDB entries)
56. Species Clostridium butyricum [TaxId:632245] [256900] (4 PDB entries)
57. Species Clostridium scindens [TaxId:29347] [234900] (2 PDB entries)
58. Species Clostridium symbiosum [TaxId:1512] [231640] (1 PDB entry)
59. Species Clostridium thermocellum [TaxId:1515] [187820] (1 PDB entry)
60. Species Cochliobolus lunatus [TaxId:5503] [225937] (9 PDB entries)
61. Species Corynebacterium glutamicum [TaxId:1718] [188585] (1 PDB entry)
62. Species Corynebacterium sp. [TaxId:1720] [279066] (3 PDB entries)
63. Species Coxiella burnetii [TaxId:227377] [225776] (1 PDB entry)
64. Species Coxiella burnetii [TaxId:777] [233713] (1 PDB entry)
65. Species Cryptosporidium parvum [TaxId:5807] [225104] (1 PDB entry)
66. Species Cupriavidus necator [TaxId:381666] [224880] (4 PDB entries)
67. Species Cupriavidus taiwanensis [TaxId:164546] [229454] (1 PDB entry)
68. Species Deinococcus radiodurans [TaxId:1299] [225329] (1 PDB entry)
69. Species Enterococcus mundtii [TaxId:53346] [259610] (2 PDB entries)
70. Species Escherichia coli K-12 [TaxId:83333] [188668] (7 PDB entries)
71. Species Escherichia coli [TaxId:1116044] [269747] (1 PDB entry)
72. Species Escherichia coli [TaxId:199310] [226553] (3 PDB entries)
73. Species Escherichia coli [TaxId:217992] [188734] (2 PDB entries)
74. Species Escherichia coli [TaxId:562] [187725] (4 PDB entries)
75. Species Escherichia coli [TaxId:83334] [226481] (1 PDB entry)
76. Species Eubacterium barkeri [TaxId:1528] [225505] (1 PDB entry)
77. Species Flavobacterium frigidimaris [TaxId:262320] [267815] (1 PDB entry)
78. Species Francisella tularensis [TaxId:119856] [226000] (1 PDB entry)
79. Species Francisella tularensis [TaxId:177416] [195722] (2 PDB entries)
80. Species Gallus gallus [TaxId:9031] [275480] (1 PDB entry)
81. Species Geobacillus stearothermophilus [TaxId:1422] [225639] (2 PDB entries)
82. Species Geobacter metallireducens [TaxId:28232] [233232] (1 PDB entry)
83. Species Geobacter sulfurreducens [TaxId:35554] [233218] (1 PDB entry)
84. Species Gluconobacter frateurii [TaxId:38308] [189629] (3 PDB entries)
85. Species Gluconobacter oxydans [TaxId:290633] [271544] (2 PDB entries)
86. Species Gluconobacter oxydans [TaxId:442] [186908] (2 PDB entries)
87. Species Grape (Vitis vinifera) [TaxId:29760] [255079] (11 PDB entries)
88. Species Haemophilus influenzae [TaxId:656912] [261334] (1 PDB entry)
89. Species Helicobacter pylori [TaxId:563041] [256091] (1 PDB entry)
90. Species Helicobacter pylori [TaxId:85962] [226244] (12 PDB entries)
91. Species Human (Homo sapiens) [TaxId:9606] [186944] (39 PDB entries)
92. Species Ignisphaera aggregans [TaxId:583356] [271786] (2 PDB entries)
93. Species Klebsiella pneumoniae [TaxId:573] [225753] (2 PDB entries)
94. Species Lactobacillus kefiri [TaxId:33962] [277547] (4 PDB entries)
95. Species Lactococcus lactis [TaxId:1358] [225210] (4 PDB entries)
96. Species Leishmania major [TaxId:347515] [226495] (2 PDB entries)
97. Species Leishmania major [TaxId:5664] [226237] (2 PDB entries)
98. Species Listeria monocytogenes [TaxId:169963] [226203] (3 PDB entries)
99. Species Mayapple (Podophyllum peltatum) [TaxId:35933] [186973] (3 PDB entries)
100. Species Medicago truncatula [TaxId:3880] [259991] (7 PDB entries)
101. Species Mesorhizobium loti [TaxId:381] [189923] (3 PDB entries)
102. Species Methanothermobacter marburgensis [TaxId:79929] [235006] (2 PDB entries)
103. Species Methylobacterium extorquens [TaxId:419610] [261958] (2 PDB entries)
104. Species Mycobacterium abscessus [TaxId:561007] [189986] (2 PDB entries)
105. Species Mycobacterium avium [TaxId:1770] [189537] (2 PDB entries)
106. Species Mycobacterium avium [TaxId:243243] [189589] (5 PDB entries)
107. Species Mycobacterium avium [TaxId:262316] [196266] (1 PDB entry)
108. Species Mycobacterium marinum [TaxId:216594] [189743] (2 PDB entries)
109. Species Mycobacterium smegmatis [TaxId:246196] [189539] (5 PDB entries)
110. Species Mycobacterium thermoresistibile [TaxId:1797] [255993] (1 PDB entry)
111. Species Mycobacterium tuberculosis [TaxId:1773] [186788] (1 PDB entry)
112. Species Mycobacterium tuberculosis [TaxId:83332] [186789] (6 PDB entries)
113. Species Neisseria meningitidis [TaxId:272831] [268380] (1 PDB entry)
114. Species Nematode (Caenorhabditis elegans) [TaxId:6239] [237812] (2 PDB entries)
115. Species Norway rat (Rattus norvegicus) [TaxId:10116] [226329] (13 PDB entries)
116. Species Ocimum basilicum [TaxId:39350] [188465] (7 PDB entries)
117. Species Oenococcus oeni [TaxId:203123] [225800] (1 PDB entry)
118. Species Oryza sativa [TaxId:39947] [225643] (2 PDB entries)
119. Species Papaver somniferum [TaxId:3469] [189571] (1 PDB entry)
120. Species Pectobacterium carotovorum [TaxId:555] [272070] (2 PDB entries)
121. Species Peptoclostridium difficile [TaxId:272563] [277867] (1 PDB entry)
122. Species Peptoniphilus asaccharolyticus [TaxId:1258] [226259] (1 PDB entry)
123. Species Petunia x [TaxId:4102] [260002] (2 PDB entries)
124. Species Picrophilus torridus [TaxId:82076] [256540] (1 PDB entry)
125. Species Pig (Sus scrofa) [TaxId:9823] [225450] (1 PDB entry)
126. Species Plasmodium falciparum [TaxId:36329] [225359] (3 PDB entries)
127. Species Plesiocystis pacifica [TaxId:391625] [229449] (1 PDB entry)
128. Species Polaromonas sp. [TaxId:296591] [226304] (2 PDB entries)
129. Species Porphyromonas gingivalis [TaxId:431947] [225576] (1 PDB entry)
130. Species Pseudomonas aeruginosa [TaxId:208964] [196452] (24 PDB entries)
131. Species Pseudomonas aeruginosa [TaxId:287] [193870] (2 PDB entries)
132. Species Pseudomonas putida [TaxId:160488] [257301] (1 PDB entry)
133. Species Pseudomonas putida [TaxId:303] [226209] (1 PDB entry)
134. Species Pseudomonas syringae [TaxId:264730] [225625] (1 PDB entry)
135. Species Pseudomonas syringae [TaxId:323] [188999] (1 PDB entry)
136. Species Pyrobaculum calidifontis [TaxId:181486] [195975] (1 PDB entry)
137. Species Pyrobaculum calidifontis [TaxId:410359] [189396] (5 PDB entries)
138. Species Pyrococcus horikoshii [TaxId:70601] [187049] (1 PDB entry)
139. Species Ralstonia eutropha [TaxId:381666] [229715] (6 PDB entries)
140. Species Ralstonia sp. [TaxId:517192] [197315] (6 PDB entries)
141. Species Rhizobium etli [TaxId:347834] [226316] (3 PDB entries)
142. Species Rhizobium meliloti (Sinorhizobium meliloti) [TaxId:382] [226212] (3 PDB entries)
143. Species Rhodobacter sphaeroides [TaxId:1063] [189314] (2 PDB entries)
144. Species Rhodobacter sphaeroides [TaxId:272943] [256127] (1 PDB entry)
145. Species Rhodopseudomonas palustris [TaxId:1076] [225667] (1 PDB entry)
146. Species Rhodotorula mucilaginosa [TaxId:5537] [258954] (1 PDB entry)
147. Species Rickettsia felis [TaxId:315456] [193153] (1 PDB entry)
148. Species Rickettsia prowazekii [TaxId:782] [188682] (1 PDB entry)
149. Species Salinibacter ruber [TaxId:309807] [225984] (1 PDB entry)
150. Species Salmonella enterica [TaxId:550537] [194806] (1 PDB entry)
151. Species Salmonella enterica [TaxId:90371] [256050] (1 PDB entry)
152. Species Salmonella enterica [TaxId:99287] [189011] (1 PDB entry)
153. Species Salmonella typhi [TaxId:601] [196606] (1 PDB entry)
154. Species Salmonella typhimurium [TaxId:602] [232219] (1 PDB entry)
155. Species Salmonella typhimurium [TaxId:99287] [230409] (1 PDB entry)
156. Species Shigella flexneri [TaxId:198214] [225525] (1 PDB entry)
157. Species Shigella flexneri [TaxId:623] [188679] (2 PDB entries)
158. Species Sinorhizobium meliloti [TaxId:266834] [189876] (11 PDB entries)
159. Species Slackia exigua [TaxId:649764] [226700] (2 PDB entries)
160. Species Slime mold (Dictyostelium discoideum) [TaxId:44689] [226178] (1 PDB entry)
161. Species Sphingomonas sp. [TaxId:90322] [189409] (6 PDB entries)
162. Species Sporosarcina psychrophila [TaxId:1476] [226587] (1 PDB entry)
163. Species Staphylococcus aureus [TaxId:158878] [189493] (1 PDB entry)
164. Species Staphylococcus aureus [TaxId:93061] [189880] (1 PDB entry)
165. Species Staphylococcus aureus [TaxId:93062] [225655] (3 PDB entries)
166. Species Staphylococcus epidermidis [TaxId:1282] [258352] (2 PDB entries)
167. Species Streptococcus agalactiae [TaxId:211110] [270677] (1 PDB entry)
168. Species Streptococcus pyogenes [TaxId:1314] [224997] (2 PDB entries)
169. Species Streptococcus pyogenes [TaxId:301447] [272081] (1 PDB entry)
170. Species Streptococcus suis [TaxId:391295] [225629] (2 PDB entries)
171. Species Streptomyces clavuligerus [TaxId:1901] [230898] (2 PDB entries)
172. Species Streptomyces coelicolor [TaxId:100226] [187919] (1 PDB entry)
173. Species Streptomyces cyanogenus [TaxId:80860] [235237] (3 PDB entries)
174. Species Streptomyces fradiae [TaxId:1906] [259879] (1 PDB entry)
175. Species Streptomyces platensis [TaxId:684832] [280152] (1 PDB entry)
176. Species Sulfitobacter sp. [TaxId:314267] [270925] (1 PDB entry)
177. Species Sulfolobus acidocaldarius [TaxId:330779] [196955] (1 PDB entry)
178. Species Synechococcus elongatus [TaxId:1140] [226307] (2 PDB entries)
179. Species Synechocystis sp. [TaxId:1148] [276989] (2 PDB entries)
180. Species Thale cress (Arabidopsis thaliana) [TaxId:3702] [255800] (1 PDB entry)
181. Species Thermococcus sibiricus [TaxId:604354] [189611] (2 PDB entries)
182. Species Thermoplasma acidophilum [TaxId:2303] [187636] (6 PDB entries)
183. Species Thermoplasma volcanium [TaxId:273116] [194922] (2 PDB entries)
184. Species Thermoplasma volcanium [TaxId:50339] [255738] (3 PDB entries)
185. Species Thermotoga maritima [TaxId:2336] [225059] (1 PDB entry)
186. Species Thermotoga maritima [TaxId:243274] [224971] (3 PDB entries)
187. Species Thermotoga neapolitana [TaxId:309803] [226485] (1 PDB entry)
188. Species Thermus aquaticus [TaxId:271] [226411] (1 PDB entry)
189. Species Thermus thermophilus HB8 [TaxId:300852] [187989] (16 PDB entries)
190. Species Thermus thermophilus [TaxId:262724] [270920] (1 PDB entry)
191. Species Toxoplasma gondii [TaxId:5811] [230331] (2 PDB entries)
192. Species Trichomonas vaginalis [TaxId:5722] [276010] (4 PDB entries)
193. Species Trypanosoma brucei [TaxId:5702] [226801] (26 PDB entries)
194. Species Trypanosome (Trypanosoma brucei) [TaxId:5691] [226760] (13 PDB entries)
195. Species Uncultured archaeon [TaxId:285389] [271793] (1 PDB entry)
196. Species Uncultured bacterium [TaxId:460938] [226261] (1 PDB entry)
197. Species Vibrio cholerae [TaxId:243277] [261002] (1 PDB entry)
198. Species Vibrio cholerae [TaxId:592313] [267996] (1 PDB entry)
199. Species Vibrio parahaemolyticus [TaxId:419109] [196586] (1 PDB entry)
200. Species Vibrio vulnificus [TaxId:196600] [226533] (2 PDB entries)
201. Species Vibrio vulnificus [TaxId:216895] [226332] (1 PDB entry)
202. Species Vibrio vulnificus [TaxId:672] [196316] (1 PDB entry)
203. Species Xanthobacter autotrophicus [TaxId:78245] [187540] (3 PDB entries)

More info for Family c.2.1.0: automated matches

Timeline for Family c.2.1.0: automated matches:

Family c.2.1.0: automated matches first appeared in SCOPe 2.01
Family c.2.1.0: automated matches appears in SCOPe 2.04
Family c.2.1.0: automated matches appears in SCOPe 2.06
Family c.2.1.0: automated matches appears in the current release, SCOPe 2.08