SCOPe 2.04: Family c.94.1.0: automated matches

Lineage for Family c.94.1.0: automated matches

Root: SCOPe 2.04
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest

Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families)
Similar in architecture to the superfamily I but partly differs in topology
Family c.94.1.0: automated matches [191309] (1 protein)
not a true family

Protein:

automated matches [190039] (87 species)
not a true protein
1. Species Actinomyces odontolyticus [TaxId:411466] [189886] (1 PDB entry)
2. Species Adineta vaga [TaxId:104782] [226596] (6 PDB entries)
3. Species Agrobacterium fabrum [TaxId:176299] [258501] (4 PDB entries)
4. Species Agrobacterium tumefaciens [TaxId:176299] [260526] (3 PDB entries)
5. Species Alicyclobacillus acidocaldarius [TaxId:521098] [228890] (1 PDB entry)
6. Species Bacillus licheniformis [TaxId:279010] [260795] (1 PDB entry)
7. Species Bacillus megaterium [TaxId:1404] [238213] (2 PDB entries)
8. Species Bacillus subtilis [TaxId:1423] [187940] (7 PDB entries)
9. Species Bacillus subtilis [TaxId:224308] [194551] (2 PDB entries)
10. Species Bacillus subtilis [TaxId:535025] [189693] (4 PDB entries)
11. Species Bordetella pertussis [TaxId:257313] [255972] (1 PDB entry)
12. Species Borrelia burgdorferi [TaxId:224326] [236221] (1 PDB entry)
13. Species Burkholderia cenocepacia [TaxId:216591] [257683] (1 PDB entry)
14. Species Burkholderia pseudomallei [TaxId:320372] [226389] (1 PDB entry)
15. Species Campylobacter jejuni [TaxId:192222] [259851] (2 PDB entries)
16. Species Campylobacter jejuni [TaxId:197] [255598] (1 PDB entry)
17. Species Chicken (Gallus gallus) [TaxId:9031] [255102] (1 PDB entry)
18. Species Chlamydia trachomatis [TaxId:813] [188892] (1 PDB entry)
19. Species Chlamydophila pneumoniae [TaxId:83558] [189367] (2 PDB entries)
20. Species Clostridium botulinum [TaxId:441770] [256351] (1 PDB entry)
21. Species Clostridium difficile [TaxId:272563] [197037] (2 PDB entries)
22. Species Clostridium perfringens [TaxId:195103] [256247] (1 PDB entry)
23. Species Cow (Bos taurus) [TaxId:9913] [225036] (50 PDB entries)
24. Species Coxiella burnetii [TaxId:777] [189739] (2 PDB entries)
25. Species Cupriavidus necator [TaxId:381666] [257446] (1 PDB entry)
26. Species Desulfovibrio salexigens [TaxId:526222] [256368] (2 PDB entries)
27. Species Ehrlichia chaffeensis [TaxId:205920] [226384] (1 PDB entry)
28. Species Enterococcus faecalis [TaxId:226185] [195543] (4 PDB entries)
29. Species Escherichia coli [TaxId:562] [189696] (1 PDB entry)
30. Species Escherichia fergusonii [TaxId:585054] [258714] (1 PDB entry)
31. Species Fusobacterium nucleatum [TaxId:190304] [257501] (2 PDB entries)
32. Species Geobacillus stearothermophilus [TaxId:1422] [225397] (3 PDB entries)
33. Species Geobacter sulfurreducens [TaxId:35554] [188938] (1 PDB entry)
34. Species Haemophilus influenzae [TaxId:656912] [257455] (1 PDB entry)
35. Species Haemophilus parasuis [TaxId:456298] [189829] (1 PDB entry)
36. Species Haemophilus parasuis [TaxId:557723] [193812] (1 PDB entry)
37. Species Halomonas elongata [TaxId:2746] [255854] (1 PDB entry)
38. Species Human (Homo sapiens) [TaxId:9606] [193730] (13 PDB entries)
39. Species Lactobacillus brevis [TaxId:387344] [195626] (1 PDB entry)
40. Species Lactococcus lactis [TaxId:272623] [227880] (4 PDB entries)
41. Species Legionella pneumophila [TaxId:272624] [189169] (1 PDB entry)
42. Species Listeria monocytogenes [TaxId:169963] [193523] (2 PDB entries)
43. Species Marinobacter aquaeolei [TaxId:351348] [257503] (1 PDB entry)
44. Species Methanobacterium thermoautotrophicum [TaxId:187420] [225549] (1 PDB entry)
45. Species Methanosarcina acetivorans [TaxId:2214] [255905] (3 PDB entries)
46. Species Neisseria gonorrhoeae [TaxId:242231] [255702] (1 PDB entry)
47. Species Neisseria gonorrhoeae [TaxId:485] [255703] (2 PDB entries)
48. Species Neisseria meningitidis [TaxId:487] [232610] (2 PDB entries)
49. Species Norway rat (Rattus norvegicus) [TaxId:10116] [186759] (75 PDB entries)
50. Species Nostoc punctiforme [TaxId:63737] [188325] (1 PDB entry)
51. Species Ochrobactrum anthropi [TaxId:439375] [257422] (1 PDB entry)
52. Species Polaromonas sp. [TaxId:296591] [257484] (2 PDB entries)
53. Species Porphyromonas gingivalis [TaxId:837] [225908] (2 PDB entries)
54. Species Pseudomonas aeruginosa [TaxId:208964] [196922] (1 PDB entry)
55. Species Pseudomonas aeruginosa [TaxId:287] [195692] (2 PDB entries)
56. Species Pyrococcus horikoshii [TaxId:53953] [188797] (1 PDB entry)
57. Species Rhizobium meliloti (Sinorhizobium meliloti) [TaxId:382] [188303] (2 PDB entries)
58. Species Rhodobacter sphaeroides [TaxId:349101] [257489] (1 PDB entry)
59. Species Ruminococcus gnavus [TaxId:411470] [194126] (1 PDB entry)
60. Species Salmonella enterica [TaxId:90371] [256251] (1 PDB entry)
61. Species Salmonella typhimurium [TaxId:90371] [189953] (1 PDB entry)
62. Species Silicibacter pomeroyi [TaxId:89184] [189007] (1 PDB entry)
63. Species Sphingobium chlorophenolicum [TaxId:46429] [261279] (1 PDB entry)
64. Species Staphylococcus aureus [TaxId:158878] [189432] (1 PDB entry)
65. Species Staphylococcus aureus [TaxId:93061] [256289] (2 PDB entries)
66. Species Streptococcus mutans [TaxId:1309] [224911] (1 PDB entry)
67. Species Streptococcus pneumoniae [TaxId:170187] [226722] (3 PDB entries)
68. Species Streptococcus pneumoniae [TaxId:525381] [226370] (1 PDB entry)
69. Species Streptococcus pneumoniae [TaxId:637987] [193477] (6 PDB entries)
70. Species Streptococcus thermophilus [TaxId:264199] [232515] (1 PDB entry)
71. Species Streptomyces glaucescens [TaxId:1907] [255902] (3 PDB entries)
72. Species Sulfurospirillum deleyianum [TaxId:525898] [256378] (1 PDB entry)
73. Species Synechocystis sp. PCC 6803 [TaxId:1148] [187344] (3 PDB entries)
74. Species Synechocystis sp. [TaxId:1148] [225435] (2 PDB entries)
75. Species Thale cress (Arabidopsis thaliana) [TaxId:3702] [226598] (1 PDB entry)
76. Species Thermoactinomyces vulgaris [TaxId:2026] [193732] (4 PDB entries)
77. Species Thermotoga maritima [TaxId:243274] [187721] (4 PDB entries)
78. Species Thermus thermophilus HB8 [TaxId:300852] [226637] (6 PDB entries)
79. Species Thermus thermophilus [TaxId:262724] [193882] (5 PDB entries)
80. Species Treponema pallidum [TaxId:243276] [225334] (1 PDB entry)
81. Species Verminephrobacter eiseniae [TaxId:391735] [257451] (1 PDB entry)
82. Species Vibrio cholerae [TaxId:593588] [257929] (1 PDB entry)
83. Species Vibrio parahaemolyticus [TaxId:670] [233133] (1 PDB entry)
84. Species Wolinella succinogenes [TaxId:844] [189100] (1 PDB entry)
85. Species Xanthomonas axonopodis [TaxId:190486] [225275] (1 PDB entry)
86. Species Xanthomonas axonopodis [TaxId:92829] [225663] (1 PDB entry)
87. Species Yersinia enterocolitica [TaxId:630] [231285] (4 PDB entries)

More info for Family c.94.1.0: automated matches

Timeline for Family c.94.1.0: automated matches:

Family c.94.1.0: automated matches first appeared in SCOPe 2.01
Family c.94.1.0: automated matches appears in SCOPe 2.03
Family c.94.1.0: automated matches appears in SCOPe 2.05
Family c.94.1.0: automated matches appears in the current release, SCOPe 2.08