SCOPe 2.07: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.07
Class a: All alpha proteins [46456] (289 folds)
Fold a.8: immunoglobulin/albumin-binding domain-like [46996] (11 superfamilies)
3 helices; bundle, closed, left-handed twist; up-and-down; mirror topology to the spectrin-like fold
Superfamily a.8.1: Bacterial immunoglobulin/albumin-binding domains [46997] (3 families)
Family a.8.1.1: Immunoglobulin-binding protein A modules [46998] (2 proteins)
automatically mapped to Pfam PF02216
Protein automated matches [191290] (5 species)
not a true protein

Species:

Artificial gene [TaxId:32630] [255483] (1 PDB entry)
- Domain for 2m5a:
  - Domain d2m5ab_: 2m5a B: [243116]
    Other proteins in same PDB: d2m5aa1, d2m5aa2
    automated match to d1h0ta_
Engineered binding [255533] (1 PDB entry)
- Domains for 2otk:
  1. Domain d2otke_: 2otk E: [243378]
    automated match to d1ss1a_
  2. Domain d2otkf_: 2otk F: [243379]
    automated match to d1ss1a_
Staphylococcus aureus [346170] (1 PDB entry)
- Domain for 1spz:
  - Domain d1spzz_: 1spz Z: [344519]
    automated match to d1edia_
Staphylococcus aureus [TaxId:1280] [189943] (19 PDB entries)
1. Domain for 1zxg:
  - Domain d1zxga_: 1zxg A: [241176]
    automated match to d1bdca_
2. Domains for 2b87:
  1. Domain d2b87a_: 2b87 A: [241282]
    automated match to d1h0ta_
  2. Domain d2b87b_: 2b87 B: [241283]
    automated match to d1h0ta_
3. Domain for 2b88:
  - Domain d2b88a_: 2b88 A: [241284]
    automated match to d1h0ta_
4. Domain for 2b89:
  - Domain d2b89a_: 2b89 A: [241285]
    automated match to d1h0ta_
5. Domain for 2kzi:
  - Domain d2kzia_: 2kzi A: [242714]
    automated match to d1h0ta_
6. Domain for 2kzj:
  - Domain d2kzja_: 2kzj A: [242715]
    automated match to d1h0ta_
7. Domains for 3qwo:
  1. Domain d3qwoc_: 3qwo C: [184677]
    Other proteins in same PDB: d3qwob1, d3qwob2, d3qwol1, d3qwol2
    automated match to d1h0ta_
    complexed with edo, so4
  2. Domain d3qwop_: 3qwo P: [184678]
    Other proteins in same PDB: d3qwob1, d3qwob2, d3qwol1, d3qwol2
    automated match to d1h0ta_
    complexed with edo, so4
8. Domain for 4npd:
  - Domain d4npda_: 4npd A: [260512]
    automated match to d1bdca_
    complexed with scn, zn
9. Domain for 4npe:
  - Domain d4npea_: 4npe A: [260194]
    automated match to d1bdca_
    complexed with scn, zn
10. Domains for 4npf:
  1. Domain d4npfx1: 4npf X:2-58 [260510]
    automated match to d1h0ta_
  2. Domain d4npfx2: 4npf X:101-158 [260511]
    automated match to d1h0ta_
  3. Domain d4npfy1: 4npf Y:1-58 [260192]
    automated match to d1h0ta_
  4. Domain d4npfy2: 4npf Y:101-158 [260193]
    automated match to d1h0ta_
11. Domain for 5djt:
  - Domain d5djtb_: 5djt B: [319709]
    automated match to d1bdca_
    complexed with cl, cu, fmn
12. Domains for 5dju:
  1. Domain d5djub_: 5dju B: [319704]
    automated match to d1bdca_
    complexed with cl, fmn
  2. Domain d5djud_: 5dju D: [319728]
    automated match to d1bdca_
    complexed with cl, fmn
13. Domains for 5efw:
  1. Domain d5efwb_: 5efw B: [319735]
    automated match to d1bdca_
    complexed with fmn, so4
  2. Domain d5efwc_: 5efw C: [319750]
    automated match to d1bdca_
    complexed with fmn, so4
14. Domain for 5u3d:
  - Domain d5u3dc1: 5u3d C:4-54 [347693]
    Other proteins in same PDB: d5u3da1, d5u3da2, d5u3dc2, d5u3de1, d5u3de2
    automated match to d3qwoc_
    complexed with mry
15. Domain for 6b9z:
  - Domain d6b9zc1: 6b9z C:4-54 [356992]
    Other proteins in same PDB: d6b9za1, d6b9za2, d6b9zc2, d6b9ze1, d6b9ze2
    automated match to d3qwoc_
16. Domains for 6fgo:
  1. Domain d6fgoe_: 6fgo E: [353686]
    automated match to d2spza_
    complexed with bma, ca, cl, fuc, gol, man, nag, peg
  2. Domain d6fgof_: 6fgo F: [353670]
    automated match to d2spza_
    complexed with bma, ca, cl, fuc, gol, man, nag, peg
  3. Domain d6fgog_: 6fgo G: [353669]
    automated match to d2spza_
    complexed with bma, ca, cl, fuc, gol, man, nag, peg
  4. Domain d6fgoh_: 6fgo H: [353688]
    automated match to d2spza_
    complexed with bma, ca, cl, fuc, gol, man, nag, peg
17. Domains for 6k6a:
  1. Domain d6k6ac1: 6k6a C:1803-1860 [372955]
    Other proteins in same PDB: d6k6aa_, d6k6ab_, d6k6ac2
    automated match to d1bdca_
  2. Domain d6k6ad_: 6k6a D: [372976]
    Other proteins in same PDB: d6k6aa_, d6k6ab_, d6k6ac2
    automated match to d1bdca_
18. Domain for 6k6b:
  - Domain d6k6bb1: 6k6b B:3-57 [372962]
    Other proteins in same PDB: d6k6ba_, d6k6bb2
    automated match to d1zxga_
19. Domain for 6sow:
  - Domain d6sowa1: 6sow A:2-58 [391988]
    Other proteins in same PDB: d6sowa2
    automated match to d4npda_
Staphylococcus aureus [TaxId:158878] [228180] (3 PDB entries)
1. Domain for 4hjg:
  - Domain d4hjgh1: 4hjg H:4-54 [228181]
    Other proteins in same PDB: d4hjga1, d4hjga2, d4hjge_, d4hjgh2
    automated match to d1h0ta_
2. Domain for 4hkz:
  - Domain d4hkzh1: 4hkz H:4-54 [228183]
    Other proteins in same PDB: d4hkza1, d4hkza2, d4hkze1, d4hkze2, d4hkzh2
    automated match to d1h0ta_
    complexed with cl
3. Domain for 4ioi:
  - Domain d4ioih1: 4ioi H:4-54 [234889]
    Other proteins in same PDB: d4ioia1, d4ioia2, d4ioie1, d4ioie2, d4ioih2
    automated match to d4hjgh_

More info for Protein automated matches from a.8.1.1: Immunoglobulin-binding protein A modules

Timeline for Protein automated matches from a.8.1.1: Immunoglobulin-binding protein A modules:

Protein automated matches from a.8.1.1: Immunoglobulin-binding protein A modules first appeared in SCOPe 2.01
Protein automated matches from a.8.1.1: Immunoglobulin-binding protein A modules appears in SCOPe 2.06
Protein automated matches from a.8.1.1: Immunoglobulin-binding protein A modules appears in the current release, SCOPe 2.08