SCOPe 2.05: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.05
Class b: All beta proteins [48724] (176 folds)

Fold b.82: Double-stranded beta-helix [51181] (7 superfamilies)
one turn of helix is made by two pairs of antiparallel strands linked with short turns
has appearance of a sandwich of distinct architecture and jelly-roll topology

Superfamily b.82.2: Clavaminate synthase-like [51197] (16 families)
Iron and ketoglutarate-dependent enzymes; elaborated version of this common fold
Family b.82.2.0: automated matches [191672] (1 protein)
not a true family
Protein automated matches [191281] (9 species)
not a true protein

Species:

Human (Homo sapiens) [TaxId:9606] [255708] (1 PDB entry)
- Domains for 2ypd:
  1. Domain d2ypda_: 2ypd A: [244795]
    automated match to d4c8da_
    complexed with emt, na
  2. Domain d2ypdb_: 2ypd B: [244796]
    automated match to d4c8da_
    complexed with emt, na
Mycobacterium avium [TaxId:243243] [189899] (1 PDB entry)
- Domains for 3r1j:
  1. Domain d3r1ja_: 3r1j A: [184775]
    automated match to d1oija_
    complexed with cl, edo, fe
  2. Domain d3r1jb_: 3r1j B: [184776]
    automated match to d1oija_
    complexed with cl, edo, fe
Mycobacterium marinum [TaxId:216594] [196268] (1 PDB entry)
- Domains for 3swt:
  1. Domain d3swta_: 3swt A: [200723]
    automated match to d3swtb_
    complexed with edo, fe, peg
  2. Domain d3swtb_: 3swt B: [196269]
    automated match to d3r1jb_
    complexed with edo, fe, peg
Mycobacterium smegmatis [TaxId:246196] [193240] (1 PDB entry)
- Domains for 4j5i:
  1. Domain d4j5ia_: 4j5i A: [193241]
    automated match to d3r1ja_
    complexed with edo, fe, mg
  2. Domain d4j5ib_: 4j5i B: [202700]
    automated match to d4j5ia_
    complexed with edo, fe, mg
  3. Domain d4j5ic_: 4j5i C: [202701]
    automated match to d4j5ia_
    complexed with edo, fe, mg
  4. Domain d4j5id_: 4j5i D: [202702]
    automated match to d4j5ia_
    complexed with edo, fe, mg
  5. Domain d4j5ie_: 4j5i E: [202703]
    automated match to d4j5ia_
    complexed with edo, fe, mg
  6. Domain d4j5if_: 4j5i F: [202704]
    automated match to d4j5ia_
    complexed with edo, fe, mg
  7. Domain d4j5ig_: 4j5i G: [202705]
    automated match to d4j5ia_
    complexed with edo, fe, mg
  8. Domain d4j5ih_: 4j5i H: [202706]
    automated match to d4j5ia_
    complexed with edo, fe, mg
Mycobacterium tuberculosis [TaxId:1773] [197235] (2 PDB entries)
1. Domains for 4cvy:
  1. Domain d4cvya_: 4cvy A: [262636]
    automated match to d3swtb_
    complexed with fe, no3
  2. Domain d4cvyb_: 4cvy B: [262637]
    automated match to d3swtb_
    complexed with fe, no3
  3. Domain d4cvyc_: 4cvy C: [261654]
    automated match to d3swtb_
    complexed with fe, no3
  4. Domain d4cvyd_: 4cvy D: [261655]
    automated match to d3swtb_
    complexed with fe, no3
2. Domains for 4ffa:
  1. Domain d4ffaa_: 4ffa A: [197236]
    automated match to d3r1ja_
    complexed with no3
  2. Domain d4ffab_: 4ffa B: [197237]
    automated match to d3r1ja_
    complexed with no3
  3. Domain d4ffac_: 4ffa C: [202031]
    automated match to d4ffaa_
    complexed with no3
  4. Domain d4ffad_: 4ffa D: [202032]
    automated match to d4ffaa_
    complexed with no3
Neurospora crassa [TaxId:5141] [278316] (4 PDB entries)
1. Domains for 5c3p:
  1. Domain d5c3pa_: 5c3p A: [278317]
    automated match to d1odna_
    complexed with akg, edo, ni
  2. Domain d5c3pb_: 5c3p B: [278320]
    automated match to d1odna_
    complexed with akg, edo, ni
  3. Domain d5c3pc_: 5c3p C: [278319]
    automated match to d1odna_
    complexed with akg, edo, ni
  4. Domain d5c3pd_: 5c3p D: [278321]
    automated match to d1odna_
    complexed with akg, edo, ni
2. Domains for 5c3q:
  1. Domain d5c3qa_: 5c3q A: [278329]
    automated match to d1odna_
    complexed with akg, edo, ni, tdr
  2. Domain d5c3qb_: 5c3q B: [278330]
    automated match to d1odna_
    complexed with akg, edo, ni, tdr
  3. Domain d5c3qc_: 5c3q C: [278331]
    automated match to d1odna_
    complexed with akg, edo, ni, tdr
  4. Domain d5c3qd_: 5c3q D: [278336]
    automated match to d1odna_
    complexed with akg, edo, ni, tdr
3. Domains for 5c3r:
  1. Domain d5c3ra_: 5c3r A: [278327]
    automated match to d1odna_
    complexed with akg, edo, hmu, ni
  2. Domain d5c3rb_: 5c3r B: [278326]
    automated match to d1odna_
    complexed with akg, edo, hmu, ni
  3. Domain d5c3rc_: 5c3r C: [278325]
    automated match to d1odna_
    complexed with akg, edo, hmu, ni
  4. Domain d5c3rd_: 5c3r D: [278328]
    automated match to d1odna_
    complexed with akg, edo, hmu, ni
4. Domains for 5c3s:
  1. Domain d5c3sa_: 5c3s A: [278318]
    automated match to d1odna_
    complexed with akg, edo, fyu, ni
  2. Domain d5c3sb_: 5c3s B: [278322]
    automated match to d1odna_
    complexed with akg, edo, fyu, ni
  3. Domain d5c3sc_: 5c3s C: [278324]
    automated match to d1odna_
    complexed with akg, edo, fyu, ni
  4. Domain d5c3sd_: 5c3s D: [278323]
    automated match to d1odna_
    complexed with akg, edo, fyu, ni
Pseudomonas putida [TaxId:160488] [259652] (2 PDB entries)
1. Domains for 4iw3:
  1. Domain d4iw3a_: 4iw3 A: [259653]
    Other proteins in same PDB: d4iw3b1, d4iw3b2, d4iw3b3, d4iw3k1, d4iw3k2, d4iw3k3
    automated match to d4jzra_
    complexed with gdp, mg, mn, oga
  2. Domain d4iw3j_: 4iw3 J: [259654]
    Other proteins in same PDB: d4iw3b1, d4iw3b2, d4iw3b3, d4iw3k1, d4iw3k2, d4iw3k3
    automated match to d4jzra_
    complexed with gdp, mg, mn, oga
2. Domains for 4j25:
  1. Domain d4j25a_: 4j25 A: [259759]
    automated match to d4jzra_
    complexed with mn, oga
  2. Domain d4j25b_: 4j25 B: [262736]
    automated match to d4j25a_
    complexed with mn, oga
  3. Domain d4j25c_: 4j25 C: [262737]
    automated match to d4j25a_
    complexed with mn, oga
  4. Domain d4j25d_: 4j25 D: [262738]
    automated match to d4j25a_
    complexed with mn, oga
  5. Domain d4j25e_: 4j25 E: [262739]
    automated match to d4j25a_
    complexed with mn, oga
  6. Domain d4j25f_: 4j25 F: [262740]
    automated match to d4j25a_
    complexed with mn, oga
  7. Domain d4j25g_: 4j25 G: [262741]
    automated match to d4j25a_
    complexed with mn, oga
  8. Domain d4j25h_: 4j25 H: [262742]
    automated match to d4j25a_
    complexed with mn, oga
Rhizobium loti [TaxId:266835] [259686] (2 PDB entries)
1. Domain for 4p7w:
  - Domain d4p7wa_: 4p7w A: [259687]
    automated match to d1e5sa_
    complexed with akg, co, pro
2. Domain for 4p7x:
  - Domain d4p7xa_: 4p7x A: [267148]
    automated match to d4p7wa_
    complexed with akg, co, cxs, so4, ycp
Yersinia pestis [TaxId:632] [268729] (1 PDB entry)
- Domain for 4rgk:
  - Domain d4rgka_: 4rgk A: [268730]
    automated match to d2dbia_
    complexed with edo, gol, so4

More info for Protein automated matches from b.82.2.0: automated matches

Timeline for Protein automated matches from b.82.2.0: automated matches:

Protein automated matches from b.82.2.0: automated matches first appeared in SCOPe 2.01
Protein automated matches from b.82.2.0: automated matches appears in SCOPe 2.04
Protein automated matches from b.82.2.0: automated matches appears in SCOPe 2.06
Protein automated matches from b.82.2.0: automated matches appears in the current release, SCOPe 2.08