Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2344607Class b: All beta proteins [48724] (178 folds)
  3. 2403751Fold b.82: Double-stranded beta-helix [51181] (7 superfamilies)
    one turn of helix is made by two pairs of antiparallel strands linked with short turns
    has appearance of a sandwich of distinct architecture and jelly-roll topology
  4. 2404605Superfamily b.82.2: Clavaminate synthase-like [51197] (16 families) (S)
    Iron and ketoglutarate-dependent enzymes; elaborated version of this common fold
  5. 2405395Family b.82.2.0: automated matches [191672] (1 protein)
    not a true family
  6. 2405396Protein automated matches [191281] (16 species)
    not a true protein

Species:

  1. 2405397Burkholderia ambifaria [TaxId:398577] [335228] (1 PDB entry)
  2. 2405400Burkholderia xenovorans [TaxId:266265] [314895] (3 PDB entries)
    1. Domains for 5hsx:
      1. 2405401Domain d5hsxa_: 5hsx A: [315000]
        automated match to d1oiic_
        complexed with edo, gol, na
      2. 2405402Domain d5hsxb_: 5hsx B: [314896]
        automated match to d3r1ja_
        complexed with edo, gol, na
    2. Domains for 5j92:
      1. 2405405Domain d5j92a_: 5j92 A: [317344]
        automated match to d1otjc_
        complexed with act, fe2
      2. 2405406Domain d5j92b_: 5j92 B: [317289]
        automated match to d1otjc_
        complexed with act, fe2
      3. 2405407Domain d5j92c_: 5j92 C: [317292]
        automated match to d1otjc_
        complexed with act, fe2
      4. 2405408Domain d5j92d_: 5j92 D: [317262]
        automated match to d1otjc_
        complexed with act, fe2
    3. Domains for 5keu:
      1. 2405403Domain d5keua_: 5keu A: [318821]
        automated match to d5hsxb_
        complexed with edo, fmt, mg
      2. 2405404Domain d5keub_: 5keu B: [318812]
        automated match to d5hsxb_
        complexed with edo, fmt, mg
  3. 2405409Caulobacter crescentus [TaxId:190650] [311323] (1 PDB entry)
  4. 2405412Fungus (Neurospora crassa) [TaxId:5141] [278316] (4 PDB entries)
    1. Domains for 5c3p:
      1. 2405417Domain d5c3pa_: 5c3p A: [278317]
        Other proteins in same PDB: d5c3pb2
        automated match to d1odna_
        complexed with akg, edo, ni
      2. 2405418Domain d5c3pb1: 5c3p B:1-331 [278320]
        Other proteins in same PDB: d5c3pb2
        automated match to d1odna_
        complexed with akg, edo, ni
      3. 2405419Domain d5c3pc_: 5c3p C: [278319]
        Other proteins in same PDB: d5c3pb2
        automated match to d1odna_
        complexed with akg, edo, ni
      4. 2405420Domain d5c3pd_: 5c3p D: [278321]
        Other proteins in same PDB: d5c3pb2
        automated match to d1odna_
        complexed with akg, edo, ni
    2. Domains for 5c3q:
      1. 2405413Domain d5c3qa1: 5c3q A:1-333 [278329]
        Other proteins in same PDB: d5c3qa2
        automated match to d1odna_
        complexed with akg, edo, ni, tdr
      2. 2405414Domain d5c3qb_: 5c3q B: [278330]
        Other proteins in same PDB: d5c3qa2
        automated match to d1odna_
        complexed with akg, edo, ni, tdr
      3. 2405415Domain d5c3qc_: 5c3q C: [278331]
        Other proteins in same PDB: d5c3qa2
        automated match to d1odna_
        complexed with akg, edo, ni, tdr
      4. 2405416Domain d5c3qd_: 5c3q D: [278336]
        Other proteins in same PDB: d5c3qa2
        automated match to d1odna_
        complexed with akg, edo, ni, tdr
    3. Domains for 5c3r:
      1. 2405425Domain d5c3ra_: 5c3r A: [278327]
        automated match to d1odna_
        complexed with akg, edo, hmu, ni
      2. 2405426Domain d5c3rb_: 5c3r B: [278326]
        automated match to d1odna_
        complexed with akg, edo, hmu, ni
      3. 2405427Domain d5c3rc_: 5c3r C: [278325]
        automated match to d1odna_
        complexed with akg, edo, hmu, ni
      4. 2405428Domain d5c3rd_: 5c3r D: [278328]
        automated match to d1odna_
        complexed with akg, edo, hmu, ni
    4. Domains for 5c3s:
      1. 2405421Domain d5c3sa1: 5c3s A:1-332 [278318]
        Other proteins in same PDB: d5c3sa2
        automated match to d1odna_
        complexed with akg, edo, fyu, ni
      2. 2405422Domain d5c3sb_: 5c3s B: [278322]
        Other proteins in same PDB: d5c3sa2
        automated match to d1odna_
        complexed with akg, edo, fyu, ni
      3. 2405423Domain d5c3sc_: 5c3s C: [278324]
        Other proteins in same PDB: d5c3sa2
        automated match to d1odna_
        complexed with akg, edo, fyu, ni
      4. 2405424Domain d5c3sd_: 5c3s D: [278323]
        Other proteins in same PDB: d5c3sa2
        automated match to d1odna_
        complexed with akg, edo, fyu, ni
  5. 2405429Human (Homo sapiens) [TaxId:9606] [255708] (2 PDB entries)
    1. Domains for 2ypd:
      1. 2405432Domain d2ypda1: 2ypd A:2157-2497 [244795]
        Other proteins in same PDB: d2ypda2, d2ypdb2
        automated match to d4c8da_
        complexed with emt, na
      2. 2405433Domain d2ypdb1: 2ypd B:2157-2497 [244796]
        Other proteins in same PDB: d2ypda2, d2ypdb2
        automated match to d4c8da_
        complexed with emt, na
    2. Domains for 5fzo:
      1. 2405430Domain d5fzoa1: 5fzo A:2157-2498 [314590]
        Other proteins in same PDB: d5fzoa2, d5fzob2
        automated match to d4c8da_
        complexed with cl, edo, mn
      2. 2405431Domain d5fzob1: 5fzo B:2157-2498 [314589]
        Other proteins in same PDB: d5fzoa2, d5fzob2
        automated match to d4c8da_
        complexed with cl, edo, mn
  6. 2405434Mycobacterium abscessus [TaxId:561007] [311480] (1 PDB entry)
  7. 2405443Mycobacterium avium [TaxId:243243] [189899] (1 PDB entry)
  8. 2405446Mycobacterium marinum [TaxId:216594] [196268] (1 PDB entry)
  9. 2405449Mycobacterium smegmatis [TaxId:246196] [193240] (1 PDB entry)
  10. 2405458Mycobacterium tuberculosis [TaxId:1773] [197235] (2 PDB entries)
    1. Domains for 4cvy:
      1. 2405459Domain d4cvya_: 4cvy A: [262636]
        automated match to d3swtb_
        complexed with fe, no3
      2. 2405460Domain d4cvyb_: 4cvy B: [262637]
        automated match to d3swtb_
        complexed with fe, no3
      3. 2405461Domain d4cvyc_: 4cvy C: [261654]
        automated match to d3swtb_
        complexed with fe, no3
      4. 2405462Domain d4cvyd_: 4cvy D: [261655]
        automated match to d3swtb_
        complexed with fe, no3
    2. Domains for 4ffa:
      1. 2405463Domain d4ffaa_: 4ffa A: [197236]
        automated match to d3r1ja_
        complexed with no3
      2. 2405464Domain d4ffab_: 4ffa B: [197237]
        automated match to d3r1ja_
        complexed with no3
      3. 2405465Domain d4ffac_: 4ffa C: [202031]
        automated match to d4ffaa_
        complexed with no3
      4. 2405466Domain d4ffad_: 4ffa D: [202032]
        automated match to d4ffaa_
        complexed with no3
  11. 2405467Pseudomonas putida [TaxId:160488] [259652] (2 PDB entries)
    1. Domains for 4iw3:
      1. 2405476Domain d4iw3a_: 4iw3 A: [259653]
        Other proteins in same PDB: d4iw3b1, d4iw3b2, d4iw3b3, d4iw3k1, d4iw3k2, d4iw3k3
        automated match to d4jzra_
        complexed with gdp, mg, mn, oga
      2. 2405477Domain d4iw3j_: 4iw3 J: [259654]
        Other proteins in same PDB: d4iw3b1, d4iw3b2, d4iw3b3, d4iw3k1, d4iw3k2, d4iw3k3
        automated match to d4jzra_
        complexed with gdp, mg, mn, oga
    2. Domains for 4j25:
      1. 2405468Domain d4j25a1: 4j25 A:2-206 [259759]
        Other proteins in same PDB: d4j25a2, d4j25b2, d4j25c2, d4j25d2
        automated match to d4jzra_
        complexed with mn, oga
      2. 2405469Domain d4j25b1: 4j25 B:2-203 [262736]
        Other proteins in same PDB: d4j25a2, d4j25b2, d4j25c2, d4j25d2
        automated match to d4j25a_
        complexed with mn, oga
      3. 2405470Domain d4j25c1: 4j25 C:2-202 [262737]
        Other proteins in same PDB: d4j25a2, d4j25b2, d4j25c2, d4j25d2
        automated match to d4j25a_
        complexed with mn, oga
      4. 2405471Domain d4j25d1: 4j25 D:2-207 [262738]
        Other proteins in same PDB: d4j25a2, d4j25b2, d4j25c2, d4j25d2
        automated match to d4j25a_
        complexed with mn, oga
      5. 2405472Domain d4j25e_: 4j25 E: [262739]
        Other proteins in same PDB: d4j25a2, d4j25b2, d4j25c2, d4j25d2
        automated match to d4j25a_
        complexed with mn, oga
      6. 2405473Domain d4j25f_: 4j25 F: [262740]
        Other proteins in same PDB: d4j25a2, d4j25b2, d4j25c2, d4j25d2
        automated match to d4j25a_
        complexed with mn, oga
      7. 2405474Domain d4j25g_: 4j25 G: [262741]
        Other proteins in same PDB: d4j25a2, d4j25b2, d4j25c2, d4j25d2
        automated match to d4j25a_
        complexed with mn, oga
      8. 2405475Domain d4j25h_: 4j25 H: [262742]
        Other proteins in same PDB: d4j25a2, d4j25b2, d4j25c2, d4j25d2
        automated match to d4j25a_
        complexed with mn, oga
  12. 2405478Rhizobium loti [TaxId:266835] [259686] (2 PDB entries)
    1. Domain for 4p7w:
    2. Domain for 4p7x:
  13. 2405481Yersinia pestis [TaxId:632] [268729] (1 PDB entry)
  14. 3053505Oryza sativa [TaxId:39947] [353567] (2 PDB entries)
    1. Domain for 5xeg:
    2. Domain for 5xoi:
  15. 3055928Sphingobium herbicidovorans [TaxId:1219045] [355990] (2 PDB entries)
    1. Domains for 6d0o:
      1. 3055936Domain d6d0od1: 6d0o D:11-295 [355998]
        Other proteins in same PDB: d6d0oa2, d6d0ob2, d6d0oc2, d6d0od2
        automated match to d1otja_
        complexed with akg, co
      2. 3055944Domain d6d0oa1: 6d0o A:10-295 [356006]
        Other proteins in same PDB: d6d0oa2, d6d0ob2, d6d0oc2, d6d0od2
        automated match to d1otja_
        complexed with akg, co
      3. 3055966Domain d6d0oc1: 6d0o C:12-295 [356028]
        Other proteins in same PDB: d6d0oa2, d6d0ob2, d6d0oc2, d6d0od2
        automated match to d1otja_
        complexed with akg, co
      4. 3055984Domain d6d0ob1: 6d0o B:11-295 [356046]
        Other proteins in same PDB: d6d0oa2, d6d0ob2, d6d0oc2, d6d0od2
        automated match to d1otja_
        complexed with akg, co
    2. Domains for 6d1o:
      1. 3055929Domain d6d1of_: 6d1o F: [355991]
        automated match to d1otja_
      2. 3055930Domain d6d1oe_: 6d1o E: [355992]
        automated match to d1otja_
      3. 3055961Domain d6d1oc_: 6d1o C: [356023]
        automated match to d1otja_
      4. 3055982Domain d6d1ob_: 6d1o B: [356044]
        automated match to d1otja_
      5. 3056018Domain d6d1og_: 6d1o G: [356080]
        automated match to d1otja_
      6. 3056080Domain d6d1oh_: 6d1o H: [356142]
        automated match to d1otja_
      7. 3056082Domain d6d1od_: 6d1o D: [356144]
        automated match to d1otja_
      8. 3056094Domain d6d1oa_: 6d1o A: [356156]
        automated match to d1otja_
  16. 3055931Sphingobium herbicidovorans [TaxId:76947] [355993] (3 PDB entries)
    1. Domains for 6d3h:
      1. 3055946Domain d6d3hi_: 6d3h I: [356008]
        automated match to d1otjb_
        complexed with akg, cl, co, ftv
      2. 3055963Domain d6d3hb_: 6d3h B: [356025]
        automated match to d1otjb_
        complexed with akg, cl, co, ftv
      3. 3055964Domain d6d3hm_: 6d3h M: [356026]
        automated match to d1otjb_
        complexed with akg, cl, co, ftv
      4. 3056075Domain d6d3ha_: 6d3h A: [356137]
        automated match to d1otjb_
        complexed with akg, cl, co, ftv
    2. Domain for 6d3j:
    3. Domains for 6d3m:
      1. 3055983Domain d6d3mf_: 6d3m F: [356045]
        automated match to d1otjb_
        complexed with akg, cl, co, ftj
      2. 3056057Domain d6d3mb_: 6d3m B: [356119]
        automated match to d1otjb_
        complexed with akg, cl, co, ftj
      3. 3056066Domain d6d3ma_: 6d3m A: [356128]
        automated match to d1otjb_
        complexed with akg, cl, co, ftj
      4. 3056087Domain d6d3mj_: 6d3m J: [356149]
        automated match to d1otjb_
        complexed with akg, cl, co, ftj

More info for Protein automated matches from b.82.2.0: automated matches

Timeline for Protein automated matches from b.82.2.0: automated matches: