Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2163004Fold d.19: MHC antigen-recognition domain [54451] (1 superfamily)
    dimeric
  4. 2163005Superfamily d.19.1: MHC antigen-recognition domain [54452] (2 families) (S)
  5. 2163006Family d.19.1.1: MHC antigen-recognition domain [54453] (13 protein domains)
  6. 2163926Protein automated matches [191280] (3 species)
    not a true protein

Species:

  1. 2163927Cow (Bos taurus) [TaxId:9913] [225910] (2 PDB entries)
    1. Domain for 2xfx:
    2. Domains for 3l9r:
      1. 2163929Domain d3l9ra1: 3l9r A:3-183 [199717]
        Other proteins in same PDB: d3l9ra2, d3l9ra3, d3l9rb_, d3l9rc2, d3l9rc3, d3l9rd_, d3l9re2, d3l9re3, d3l9rf_, d3l9rg2, d3l9rg3, d3l9rh_
        automated match to d1gzpa2
        complexed with cl, gol, l9q, l9r, nag
      2. 2163930Domain d3l9rc1: 3l9r C:3-183 [199719]
        Other proteins in same PDB: d3l9ra2, d3l9ra3, d3l9rb_, d3l9rc2, d3l9rc3, d3l9rd_, d3l9re2, d3l9re3, d3l9rf_, d3l9rg2, d3l9rg3, d3l9rh_
        automated match to d1gzpa2
        complexed with cl, gol, l9q, l9r, nag
      3. 2163931Domain d3l9re1: 3l9r E:3-183 [199721]
        Other proteins in same PDB: d3l9ra2, d3l9ra3, d3l9rb_, d3l9rc2, d3l9rc3, d3l9rd_, d3l9re2, d3l9re3, d3l9rf_, d3l9rg2, d3l9rg3, d3l9rh_
        automated match to d1gzpa2
        complexed with cl, gol, l9q, l9r, nag
      4. 2163932Domain d3l9rg1: 3l9r G:3-183 [199723]
        Other proteins in same PDB: d3l9ra2, d3l9ra3, d3l9rb_, d3l9rc2, d3l9rc3, d3l9rd_, d3l9re2, d3l9re3, d3l9rf_, d3l9rg2, d3l9rg3, d3l9rh_
        automated match to d1gzpa2
        complexed with cl, gol, l9q, l9r, nag
  2. 2163933Human (Homo sapiens) [TaxId:9606] [189896] (31 PDB entries)
    1. Domains for 2bc4:
      1. 2163948Domain d2bc4a1: 2bc4 A:13-96 [203578]
        Other proteins in same PDB: d2bc4a2, d2bc4b2, d2bc4c2, d2bc4c3, d2bc4d2
        automated match to d1hdma2
        complexed with cl
      2. 2163949Domain d2bc4b1: 2bc4 B:3-93 [203580]
        Other proteins in same PDB: d2bc4a2, d2bc4b2, d2bc4c2, d2bc4c3, d2bc4d2
        automated match to d1hdmb2
        complexed with cl
      3. 2163950Domain d2bc4c1: 2bc4 C:12-96 [203582]
        Other proteins in same PDB: d2bc4a2, d2bc4b2, d2bc4c2, d2bc4c3, d2bc4d2
        automated match to d1hdma2
        complexed with cl
      4. 2163951Domain d2bc4d1: 2bc4 D:3-93 [203584]
        Other proteins in same PDB: d2bc4a2, d2bc4b2, d2bc4c2, d2bc4c3, d2bc4d2
        automated match to d1hdmb2
        complexed with cl
    2. Domains for 2fse:
      1. 2163963Domain d2fsea2: 2fse A:4-81 [134018]
        Other proteins in same PDB: d2fsea1, d2fseb1, d2fsec1, d2fsed1
        automated match to d4h25a1
      2. 2163964Domain d2fsec2: 2fse C:4-81 [134022]
        Other proteins in same PDB: d2fsea1, d2fseb1, d2fsec1, d2fsed1
        automated match to d4h25a1
    3. Domains for 2wbj:
      1. 2163968Domain d2wbjb1: 2wbj B:3-92 [244086]
        Other proteins in same PDB: d2wbja1, d2wbja2, d2wbjb2, d2wbjc1, d2wbjc2, d2wbje1, d2wbje2, d2wbjf2, d2wbjg1, d2wbjg2
        automated match to d1klub2
        complexed with nag, so4
      2. 2163969Domain d2wbjf1: 2wbj F:3-92 [244092]
        Other proteins in same PDB: d2wbja1, d2wbja2, d2wbjb2, d2wbjc1, d2wbjc2, d2wbje1, d2wbje2, d2wbjf2, d2wbjg1, d2wbjg2
        automated match to d1klub2
        complexed with nag, so4
    4. Domain for 3bw9:
    5. Domain for 3bwa:
    6. Domain for 3gsn:
    7. Domain for 3gso:
    8. Domain for 3gsq:
    9. Domain for 3gsr:
    10. Domain for 3gsu:
    11. Domain for 3gsv:
    12. Domain for 3gsw:
    13. Domain for 3gsx:
    14. Domains for 3jtc:
      1. 2163936Domain d3jtca_: 3jtc A: [178819]
        Other proteins in same PDB: d3jtcc_, d3jtcd_
        automated match to d1lqvb_
        complexed with ca, mg, nag, ndg, pty
      2. 2163937Domain d3jtcb_: 3jtc B: [178820]
        Other proteins in same PDB: d3jtcc_, d3jtcd_
        automated match to d1lqvb_
        complexed with ca, mg, nag, ndg, pty
    15. Domain for 3pl6:
    16. Domain for 4aen:
    17. Domains for 4fqx:
      1. 2163954Domain d4fqxb1: 4fqx B:1-92 [221468]
        Other proteins in same PDB: d4fqxa1, d4fqxa2, d4fqxb2, d4fqxb3, d4fqxc2, d4fqxc3, d4fqxd2
        automated match to d1klub2
      2. 2163955Domain d4fqxc1: 4fqx C:15-96 [221470]
        Other proteins in same PDB: d4fqxa1, d4fqxa2, d4fqxb2, d4fqxb3, d4fqxc2, d4fqxc3, d4fqxd2
        automated match to d1hdma2
      3. 2163956Domain d4fqxd1: 4fqx D:3-93 [221472]
        Other proteins in same PDB: d4fqxa1, d4fqxa2, d4fqxb2, d4fqxb3, d4fqxc2, d4fqxc3, d4fqxd2
        automated match to d1hdmb2
    18. Domains for 4grl:
      1. 2163966Domain d4grla1: 4grl A:-1-81 [234508]
        Other proteins in same PDB: d4grla2, d4grlb2, d4grlc1, d4grlc2
        automated match to d4maya1
        complexed with nag
      2. 2163967Domain d4grlb1: 4grl B:3-94 [234510]
        Other proteins in same PDB: d4grla2, d4grlb2, d4grlc1, d4grlc2
        automated match to d4mayb1
        complexed with nag
    19. Domains for 4h25:
      1. 2163946Domain d4h25b1: 4h25 B:6-92 [234610]
        Other proteins in same PDB: d4h25a1, d4h25a2, d4h25b2, d4h25b3, d4h25b4, d4h25d1, d4h25d2, d4h25e2, d4h25e3, d4h25e4
        automated match to d4h26e1
        complexed with ipa
      2. 2163947Domain d4h25e1: 4h25 E:6-92 [234612]
        Other proteins in same PDB: d4h25a1, d4h25a2, d4h25b2, d4h25b3, d4h25b4, d4h25d1, d4h25d2, d4h25e2, d4h25e3, d4h25e4
        automated match to d4h26e1
        complexed with ipa
    20. Domains for 4h26:
      1. 2163957Domain d4h26b1: 4h26 B:6-92 [234614]
        Other proteins in same PDB: d4h26a1, d4h26a2, d4h26b2, d4h26b3, d4h26b4, d4h26d1, d4h26d2, d4h26e2, d4h26e3, d4h26e4
        automated match to d4h26e1
      2. 2163958Domain d4h26e1: 4h26 E:6-92 [228344]
        Other proteins in same PDB: d4h26a1, d4h26a2, d4h26b2, d4h26b3, d4h26b4, d4h26d1, d4h26d2, d4h26e2, d4h26e3, d4h26e4
        automated match to d2sebb2
    21. Domains for 4may:
      1. 2163952Domain d4maya1: 4may A:0-81 [228549]
        Other proteins in same PDB: d4maya2, d4mayb2, d4mayc1, d4mayc2
        automated match to d1uvqa2
        complexed with so4
      2. 2163953Domain d4mayb1: 4may B:3-94 [228556]
        Other proteins in same PDB: d4maya2, d4mayb2, d4mayc1, d4mayc2
        automated match to d1jk8b2
        complexed with so4
    22. Domains for 4mng:
      1. 2163961Domain d4mnga1: 4mng A:6-183 [253807]
        Other proteins in same PDB: d4mnga2, d4mnga3, d4mngb_, d4mngc2, d4mngc3, d4mngd_, d4mnge1, d4mnge2, d4mngf1, d4mngf2
        automated match to d3hujc1
        complexed with cis, nag
      2. 2163962Domain d4mngc1: 4mng C:6-183 [253810]
        Other proteins in same PDB: d4mnga2, d4mnga3, d4mngb_, d4mngc2, d4mngc3, d4mngd_, d4mnge1, d4mnge2, d4mngf1, d4mngf2
        automated match to d3hujc1
        complexed with cis, nag
    23. Domain for 4mq7:
    24. Domains for 4n0f:
      1. 2163970Domain d4n0fa1: 4n0f A:4-176 [253842]
        Other proteins in same PDB: d4n0fa2, d4n0fb_, d4n0fd1, d4n0fd2, d4n0fd3, d4n0fe2, d4n0ff_, d4n0fg1, d4n0fg2, d4n0fg3, d4n0fh2, d4n0fi_, d4n0fj1, d4n0fj2, d4n0fj3, d4n0fk2, d4n0fl_, d4n0fm1, d4n0fm2, d4n0fm3
        automated match to d1exua2
      2. 2163971Domain d4n0fe1: 4n0f E:4-176 [253848]
        Other proteins in same PDB: d4n0fa2, d4n0fb_, d4n0fd1, d4n0fd2, d4n0fd3, d4n0fe2, d4n0ff_, d4n0fg1, d4n0fg2, d4n0fg3, d4n0fh2, d4n0fi_, d4n0fj1, d4n0fj2, d4n0fj3, d4n0fk2, d4n0fl_, d4n0fm1, d4n0fm2, d4n0fm3
        automated match to d1exua2
      3. 2163972Domain d4n0fh1: 4n0f H:4-176 [253854]
        Other proteins in same PDB: d4n0fa2, d4n0fb_, d4n0fd1, d4n0fd2, d4n0fd3, d4n0fe2, d4n0ff_, d4n0fg1, d4n0fg2, d4n0fg3, d4n0fh2, d4n0fi_, d4n0fj1, d4n0fj2, d4n0fj3, d4n0fk2, d4n0fl_, d4n0fm1, d4n0fm2, d4n0fm3
        automated match to d1exua2
      4. 2163973Domain d4n0fk1: 4n0f K:4-176 [253860]
        Other proteins in same PDB: d4n0fa2, d4n0fb_, d4n0fd1, d4n0fd2, d4n0fd3, d4n0fe2, d4n0ff_, d4n0fg1, d4n0fg2, d4n0fg3, d4n0fh2, d4n0fi_, d4n0fj1, d4n0fj2, d4n0fj3, d4n0fk2, d4n0fl_, d4n0fm1, d4n0fm2, d4n0fm3
        automated match to d1exua2
    25. Domains for 5iue:
      1. 2292076Domain d5iuea1: 5iue A:2-181 [335377]
        Other proteins in same PDB: d5iuea2, d5iueb_, d5iuee2, d5iuef_, d5iueg2, d5iueh_, d5iuei2, d5iuej_
        automated match to d1efxa2
        complexed with nag
      2. 2292118Domain d5iueg1: 5iue G:2-181 [335419]
        Other proteins in same PDB: d5iuea2, d5iueb_, d5iuee2, d5iuef_, d5iueg2, d5iueh_, d5iuei2, d5iuej_
        automated match to d1efxa2
        complexed with nag
      3. 2292146Domain d5iuee1: 5iue E:2-181 [335447]
        Other proteins in same PDB: d5iuea2, d5iueb_, d5iuee2, d5iuef_, d5iueg2, d5iueh_, d5iuei2, d5iuej_
        automated match to d1efxa2
        complexed with nag
      4. 2292267Domain d5iuei1: 5iue I:1-181 [335568]
        Other proteins in same PDB: d5iuea2, d5iueb_, d5iuee2, d5iuef_, d5iueg2, d5iueh_, d5iuei2, d5iuej_
        automated match to d1efxa2
        complexed with nag
    26. Domain for 5l2j:
    27. Domain for 5wke:
    28. Domain for 5wkg:
    29. Domain for 5wki:
    30. Domain for 5wl1:
    31. Domain for 5xs3:
  3. 2163974Mouse (Mus musculus) [TaxId:10090] [225821] (5 PDB entries)
    1. Domain for 1zhn:
    2. Domains for 2fse:
      1. 2163981Domain d2fseb2: 2fse B:5-92 [134020]
        Other proteins in same PDB: d2fsea1, d2fseb1, d2fsec1, d2fsed1
        automated match to d1klub2
      2. 2163982Domain d2fsed2: 2fse D:4-92 [134024]
        Other proteins in same PDB: d2fsea1, d2fseb1, d2fsec1, d2fsed1
        automated match to d1klub2
    3. Domain for 3mbe:
    4. Domain for 3qib:
    5. Domains for 5dmk:
      1. 2163977Domain d5dmka1: 5dmk A:2-84 [278675]
        Other proteins in same PDB: d5dmka2, d5dmkc2, d5dmke2, d5dmkg2
        automated match to d1es0a2
        complexed with flc
      2. 2163978Domain d5dmkc1: 5dmk C:1-84 [278681]
        Other proteins in same PDB: d5dmka2, d5dmkc2, d5dmke2, d5dmkg2
        automated match to d1es0a2
        complexed with flc
      3. 2163979Domain d5dmke1: 5dmk E:1-84 [278677]
        Other proteins in same PDB: d5dmka2, d5dmkc2, d5dmke2, d5dmkg2
        automated match to d1es0a2
        complexed with flc
      4. 2163980Domain d5dmkg1: 5dmk G:1-84 [278679]
        Other proteins in same PDB: d5dmka2, d5dmkc2, d5dmke2, d5dmkg2
        automated match to d1es0a2
        complexed with flc

More info for Protein automated matches from d.19.1.1: MHC antigen-recognition domain

Timeline for Protein automated matches from d.19.1.1: MHC antigen-recognition domain: