SCOPe 2.08: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.08
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
Fold c.31: DHS-like NAD/FAD-binding domain [52466] (1 superfamily)
3 layers: a/b/a; parallel beta-sheet of 6 strands, order 321456; Rossmann-like
Superfamily c.31.1: DHS-like NAD/FAD-binding domain [52467] (7 families)
binds cofactor molecules in the opposite direction than classical Rossmann fold
Family c.31.1.5: Sir2 family of transcriptional regulators [63984] (8 proteins)
silent information regulator 2; contains insertion of a rubredoxin-like zinc finger domain
Protein automated matches [191258] (3 species)
not a true protein

Species:

Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [225225] (2 PDB entries)
1. Domain for 2od7:
  - Domain d2od7a1: 2od7 A:1-293 [205250]
    Other proteins in same PDB: d2od7a2
    automated match to d1q17c_
    complexed with a1r, zn
2. Domain for 2od9:
  - Domain d2od9a1: 2od9 A:1-293 [205251]
    Other proteins in same PDB: d2od9a2
    automated match to d1q17c_
    complexed with a1r, nca, zn
Human (Homo sapiens) [TaxId:9606] [189817] (4 PDB entries)
1. Domains for 3rig:
  1. Domain d3riga1: 3rig A:34-302 [184982]
    Other proteins in same PDB: d3riga2, d3rigb2
    automated match to d2b4ya1
    complexed with nhe, zn
  2. Domain d3rigb1: 3rig B:34-302 [184983]
    Other proteins in same PDB: d3riga2, d3rigb2
    automated match to d2b4ya1
    complexed with nhe, zn
2. Domains for 3riy:
  1. Domain d3riya1: 3riy A:34-302 [184995]
    Other proteins in same PDB: d3riya2, d3riyb2
    automated match to d2b4ya1
    complexed with nad, zn
  2. Domain d3riyb1: 3riy B:34-302 [184996]
    Other proteins in same PDB: d3riya2, d3riyb2
    automated match to d2b4ya1
    complexed with nad, zn
3. Domains for 3zgo:
  1. Domain d3zgoa1: 3zgo A:34-356 [201313]
    Other proteins in same PDB: d3zgoa2, d3zgob2
    automated match to d3zgob_
    complexed with edo, eoh, p6g, pge, zn
  2. Domain d3zgob1: 3zgo B:34-356 [197057]
    Other proteins in same PDB: d3zgoa2, d3zgob2
    automated match to d1j8fa_
    complexed with edo, eoh, p6g, pge, zn
  3. Domain d3zgoc_: 3zgo C: [201314]
    Other proteins in same PDB: d3zgoa2, d3zgob2
    automated match to d3zgob_
    complexed with edo, eoh, p6g, pge, zn
4. Domains for 3zgv:
  1. Domain d3zgva_: 3zgv A: [197061]
    automated match to d1j8fa_
    complexed with act, ar6, gol, pge, zn
  2. Domain d3zgvb_: 3zgv B: [201315]
    automated match to d3zgva_
    complexed with act, ar6, gol, pge, zn
Zebrafish (Danio rerio) [TaxId:7955] [340828] (2 PDB entries)
1. Domain for 6enx:
  - Domain d6enxa_: 6enx A: [340830]
    automated match to d2b4ya1
    complexed with bjw, dms, zn
2. Domains for 6eo0:
  1. Domain d6eo0a1: 6eo0 A:28-298 [340980]
    Other proteins in same PDB: d6eo0a2, d6eo0b2, d6eo0c2, d6eo0d2
    automated match to d2b4ya1
    complexed with bv8, bvt, edo, zn
  2. Domain d6eo0b1: 6eo0 B:28-298 [340831]
    Other proteins in same PDB: d6eo0a2, d6eo0b2, d6eo0c2, d6eo0d2
    automated match to d2b4ya1
    complexed with bv8, bvt, edo, zn
  3. Domain d6eo0c1: 6eo0 C:28-298 [340832]
    Other proteins in same PDB: d6eo0a2, d6eo0b2, d6eo0c2, d6eo0d2
    automated match to d2b4ya1
    complexed with bv8, bvt, edo, zn
  4. Domain d6eo0d1: 6eo0 D:28-298 [340829]
    Other proteins in same PDB: d6eo0a2, d6eo0b2, d6eo0c2, d6eo0d2
    automated match to d2b4ya1
    complexed with bv8, bvt, edo, zn

More info for Protein automated matches from c.31.1.5: Sir2 family of transcriptional regulators

Timeline for Protein automated matches from c.31.1.5: Sir2 family of transcriptional regulators:

Protein automated matches from c.31.1.5: Sir2 family of transcriptional regulators first appeared in SCOPe 2.01
Protein automated matches from c.31.1.5: Sir2 family of transcriptional regulators appears in SCOPe 2.07