Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2107255Fold c.31: DHS-like NAD/FAD-binding domain [52466] (1 superfamily)
    3 layers: a/b/a; parallel beta-sheet of 6 strands, order 321456; Rossmann-like
  4. 2107256Superfamily c.31.1: DHS-like NAD/FAD-binding domain [52467] (7 families) (S)
    binds cofactor molecules in the opposite direction than classical Rossmann fold
  5. 2107522Family c.31.1.5: Sir2 family of transcriptional regulators [63984] (8 protein domains)
    silent information regulator 2; contains insertion of a rubredoxin-like zinc finger domain
  6. 2107583Protein automated matches [191258] (3 species)
    not a true protein

Species:

  1. 2107584Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [225225] (2 PDB entries)
    1. Domain for 2od7:
    2. Domain for 2od9:
  2. 2107587Human (Homo sapiens) [TaxId:9606] [189817] (16 PDB entries)
    1. Domains for 3rig:
      1. 2107599Domain d3riga1: 3rig A:34-302 [184982]
        Other proteins in same PDB: d3riga2, d3rigb2
        automated match to d2b4ya1
        complexed with nhe, zn
      2. 2107600Domain d3rigb1: 3rig B:34-302 [184983]
        Other proteins in same PDB: d3riga2, d3rigb2
        automated match to d2b4ya1
        complexed with nhe, zn
    2. Domains for 3riy:
      1. 2107588Domain d3riya1: 3riy A:34-302 [184995]
        Other proteins in same PDB: d3riya2, d3riyb2
        automated match to d2b4ya1
        complexed with nad, zn
      2. 2107589Domain d3riyb1: 3riy B:34-302 [184996]
        Other proteins in same PDB: d3riya2, d3riyb2
        automated match to d2b4ya1
        complexed with nad, zn
    3. Domains for 3zgo:
      1. 2107590Domain d3zgoa1: 3zgo A:34-356 [201313]
        Other proteins in same PDB: d3zgoa2, d3zgob2
        automated match to d3zgob_
        complexed with edo, eoh, p6g, pge, zn
      2. 2107591Domain d3zgob1: 3zgo B:34-356 [197057]
        Other proteins in same PDB: d3zgoa2, d3zgob2
        automated match to d1j8fa_
        complexed with edo, eoh, p6g, pge, zn
      3. 2107592Domain d3zgoc_: 3zgo C: [201314]
        Other proteins in same PDB: d3zgoa2, d3zgob2
        automated match to d3zgob_
        complexed with edo, eoh, p6g, pge, zn
    4. Domains for 3zgv:
      1. 2107595Domain d3zgva_: 3zgv A: [197061]
        automated match to d1j8fa_
        complexed with act, ar6, gol, pge, zn
      2. 2107596Domain d3zgvb_: 3zgv B: [201315]
        automated match to d3zgva_
        complexed with act, ar6, gol, pge, zn
    5. Domain for 4rmg:
    6. Domain for 4rmh:
    7. Domain for 4rmi:
    8. Domains for 4rmj:
      1. 2107602Domain d4rmja1: 4rmj A:56-355 [269352]
        Other proteins in same PDB: d4rmja2, d4rmjb2
        automated match to d1j8fc_
        complexed with ar6, edo, na, nca, peg, pge, zn
      2. 2107603Domain d4rmjb1: 4rmj B:56-355 [269356]
        Other proteins in same PDB: d4rmja2, d4rmjb2
        automated match to d1j8fc_
        complexed with ar6, edo, na, nca, peg, pge, zn
    9. Domains for 4y6q:
      1. 2107607Domain d4y6qa_: 4y6q A: [310100]
        automated match to d1j8fc_
        complexed with omr, zn
      2. 2107608Domain d4y6qb_: 4y6q B: [310101]
        automated match to d1j8fc_
        complexed with omr, zn
      3. 2107609Domain d4y6qc_: 4y6q C: [310102]
        automated match to d1j8fc_
        complexed with omr, zn
      4. 2107610Domain d4y6qd_: 4y6q D: [310103]
        automated match to d1j8fc_
        complexed with omr, zn
    10. Domains for 5d7o:
      1. 2107597Domain d5d7oa_: 5d7o A: [310390]
        automated match to d5dy4a_
        complexed with ar6, pge, zn
      2. 2107598Domain d5d7ob_: 5d7o B: [310391]
        automated match to d5dy4a_
        complexed with ar6, pge, zn
    11. Domains for 5d7p:
      1. 2107604Domain d5d7pa1: 5d7p A:56-355 [310392]
        Other proteins in same PDB: d5d7pa2
        automated match to d5dy4a_
        complexed with ar6, ocz, peg, zn
      2. 2107605Domain d5d7pb_: 5d7p B: [310394]
        Other proteins in same PDB: d5d7pa2
        automated match to d5dy4a_
        complexed with ar6, ocz, peg, zn
    12. Domains for 5d7q:
      1. 2107611Domain d5d7qa1: 5d7q A:56-354 [310395]
        Other proteins in same PDB: d5d7qa2
        automated match to d5dy4a_
        complexed with 4i5, ar6, zn
      2. 2107612Domain d5d7qb_: 5d7q B: [310397]
        Other proteins in same PDB: d5d7qa2
        automated match to d5dy4a_
        complexed with 4i5, ar6, zn
    13. Domain for 5dy4:
    14. Domain for 5dy5:
    15. Domains for 5mar:
      1. 2287783Domain d5marb1: 5mar B:56-355 [331084]
        Other proteins in same PDB: d5mara2, d5marb2
        automated match to d4rmha_
        complexed with 7ke, act, ar6, dms, edo, gol, zn
      2. 2287803Domain d5mara1: 5mar A:56-355 [331104]
        Other proteins in same PDB: d5mara2, d5marb2
        automated match to d4rmha_
        complexed with 7ke, act, ar6, dms, edo, gol, zn
    16. Domains for 5mat:
      1. 2286243Domain d5mata1: 5mat A:56-356 [329544]
        Other proteins in same PDB: d5mata2, d5matc2
        automated match to d4rmha_
        complexed with 7kj, p6g, pg4, so4, zn
      2. 2286281Domain d5matc1: 5mat C:56-356 [329582]
        Other proteins in same PDB: d5mata2, d5matc2
        automated match to d4rmha_
        complexed with 7kj, p6g, pg4, so4, zn
  3. 2297527Danio rerio [TaxId:7955] [340828] (2 PDB entries)
    1. Domain for 6enx:
    2. Domains for 6eo0:
      1. 2297528Domain d6eo0d1: 6eo0 D:28-298 [340829]
        Other proteins in same PDB: d6eo0a2, d6eo0b2, d6eo0c2, d6eo0d2
        automated match to d2b4ya1
        complexed with bv8, bvt, edo, zn
      2. 2297530Domain d6eo0b1: 6eo0 B:28-298 [340831]
        Other proteins in same PDB: d6eo0a2, d6eo0b2, d6eo0c2, d6eo0d2
        automated match to d2b4ya1
        complexed with bv8, bvt, edo, zn
      3. 2297531Domain d6eo0c1: 6eo0 C:28-298 [340832]
        Other proteins in same PDB: d6eo0a2, d6eo0b2, d6eo0c2, d6eo0d2
        automated match to d2b4ya1
        complexed with bv8, bvt, edo, zn
      4. 2297679Domain d6eo0a1: 6eo0 A:28-298 [340980]
        Other proteins in same PDB: d6eo0a2, d6eo0b2, d6eo0c2, d6eo0d2
        automated match to d2b4ya1
        complexed with bv8, bvt, edo, zn

More info for Protein automated matches from c.31.1.5: Sir2 family of transcriptional regulators

Timeline for Protein automated matches from c.31.1.5: Sir2 family of transcriptional regulators: