Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2250849Class f: Membrane and cell surface proteins and peptides [56835] (59 folds)
  3. 2251383Fold f.4: Transmembrane beta-barrels [56924] (7 superfamilies)
    not a true fold, gathers together transmembrane barrels of different (n,S)
  4. 2251384Superfamily f.4.1: OMPA-like [56925] (5 families) (S)
    forms (8,10) barrel
  5. 2251452Family f.4.1.0: automated matches [191664] (1 protein)
    not a true family
  6. 2251453Protein automated matches [191257] (5 species)
    not a true protein

Species:

  1. 2251454Actinobacillus pleuropneumoniae [TaxId:715] [311328] (4 PDB entries)
    1. Domains for 3pqs:
      1. 2251455Domain d3pqsa2: 3pqs A:138-295 [306261]
        Other proteins in same PDB: d3pqsa1, d3pqsa3
        automated match to d3hola1
        complexed with cac, gol
      2. 2251456Domain d3pqsa4: 3pqs A:385-528 [306263]
        Other proteins in same PDB: d3pqsa1, d3pqsa3
        automated match to d3hola2
        complexed with cac, gol
    2. Domains for 4o3y:
      1. 2251459Domain d4o3ya2: 4o3y A:138-295 [307805]
        Other proteins in same PDB: d4o3ya1, d4o3ya3
        automated match to d3hola1
        complexed with act, gol; mutant
      2. 2251460Domain d4o3ya4: 4o3y A:385-528 [307807]
        Other proteins in same PDB: d4o3ya1, d4o3ya3
        automated match to d3hola2
        complexed with act, gol; mutant
    3. Domains for 4o3z:
      1. 2251461Domain d4o3za2: 4o3z A:138-295 [307809]
        Other proteins in same PDB: d4o3za1, d4o3za3
        automated match to d3hola1
        complexed with act, gol; mutant
      2. 2251462Domain d4o3za4: 4o3z A:385-528 [307811]
        Other proteins in same PDB: d4o3za1, d4o3za3
        automated match to d3hola2
        complexed with act, gol; mutant
    4. Domains for 4o49:
      1. 2251457Domain d4o49a2: 4o49 A:138-295 [307813]
        Other proteins in same PDB: d4o49a1, d4o49a3
        automated match to d3hola1
        complexed with act, gol; mutant
      2. 2251458Domain d4o49a4: 4o49 A:385-528 [307815]
        Other proteins in same PDB: d4o49a1, d4o49a3
        automated match to d3hola2
        complexed with act, gol; mutant
  2. 2251463Haemophilus parasuis [TaxId:738] [311404] (2 PDB entries)
    1. Domains for 4o4u:
      1. 2251464Domain d4o4ua2: 4o4u A:136-299 [307817]
        Other proteins in same PDB: d4o4ua1, d4o4ua3, d4o4ub1, d4o4ub3, d4o4uc1, d4o4uc3, d4o4ud1, d4o4ud3
        automated match to d3hola1
        complexed with gol; mutant
      2. 2251465Domain d4o4ua4: 4o4u A:391-537 [307819]
        Other proteins in same PDB: d4o4ua1, d4o4ua3, d4o4ub1, d4o4ub3, d4o4uc1, d4o4uc3, d4o4ud1, d4o4ud3
        automated match to d3hola2
        complexed with gol; mutant
      3. 2251466Domain d4o4ub2: 4o4u B:136-299 [307821]
        Other proteins in same PDB: d4o4ua1, d4o4ua3, d4o4ub1, d4o4ub3, d4o4uc1, d4o4uc3, d4o4ud1, d4o4ud3
        automated match to d3hola1
        complexed with gol; mutant
      4. 2251467Domain d4o4ub4: 4o4u B:391-537 [307823]
        Other proteins in same PDB: d4o4ua1, d4o4ua3, d4o4ub1, d4o4ub3, d4o4uc1, d4o4uc3, d4o4ud1, d4o4ud3
        automated match to d3hola2
        complexed with gol; mutant
      5. 2251468Domain d4o4uc2: 4o4u C:136-299 [307825]
        Other proteins in same PDB: d4o4ua1, d4o4ua3, d4o4ub1, d4o4ub3, d4o4uc1, d4o4uc3, d4o4ud1, d4o4ud3
        automated match to d3hola1
        complexed with gol; mutant
      6. 2251469Domain d4o4uc4: 4o4u C:391-535 [307827]
        Other proteins in same PDB: d4o4ua1, d4o4ua3, d4o4ub1, d4o4ub3, d4o4uc1, d4o4uc3, d4o4ud1, d4o4ud3
        automated match to d3hola2
        complexed with gol; mutant
      7. 2251470Domain d4o4ud2: 4o4u D:136-299 [307829]
        Other proteins in same PDB: d4o4ua1, d4o4ua3, d4o4ub1, d4o4ub3, d4o4uc1, d4o4uc3, d4o4ud1, d4o4ud3
        automated match to d3hola1
        complexed with gol; mutant
      8. 2251471Domain d4o4ud4: 4o4u D:391-537 [307831]
        Other proteins in same PDB: d4o4ua1, d4o4ua3, d4o4ub1, d4o4ub3, d4o4uc1, d4o4uc3, d4o4ud1, d4o4ud3
        automated match to d3hola2
        complexed with gol; mutant
    2. Domains for 4o4x:
      1. 2251472Domain d4o4xa2: 4o4x A:136-299 [307833]
        Other proteins in same PDB: d4o4xa1, d4o4xa3, d4o4xb1, d4o4xb3
        automated match to d3hola1
        complexed with gol, na, so4; mutant
      2. 2251473Domain d4o4xa4: 4o4x A:391-537 [307835]
        Other proteins in same PDB: d4o4xa1, d4o4xa3, d4o4xb1, d4o4xb3
        automated match to d3hola2
        complexed with gol, na, so4; mutant
      3. 2251474Domain d4o4xb2: 4o4x B:136-299 [307837]
        Other proteins in same PDB: d4o4xa1, d4o4xa3, d4o4xb1, d4o4xb3
        automated match to d3hola1
        complexed with gol, na, so4; mutant
      4. 2251475Domain d4o4xb4: 4o4x B:391-537 [307839]
        Other proteins in same PDB: d4o4xa1, d4o4xa3, d4o4xb1, d4o4xb3
        automated match to d3hola2
        complexed with gol, na, so4; mutant
  3. 2251476Neisseria meningitidis [TaxId:487] [256195] (2 PDB entries)
    1. Domain for 4ayn:
    2. Domains for 5kkx:
      1. 2251478Domain d5kkxa2: 5kkx A:469-612 [336820]
        Other proteins in same PDB: d5kkxa1, d5kkxb1
        automated match to d3pqsa4
        complexed with gol; mutant
      2. 2251479Domain d5kkxb2: 5kkx B:469-612 [336857]
        Other proteins in same PDB: d5kkxa1, d5kkxb1
        automated match to d3pqsa4
        complexed with gol; mutant
  4. 2251480Pisum sativum [TaxId:3888] [339412] (1 PDB entry)
  5. 2251482Yersinia pestis [TaxId:632] [189816] (4 PDB entries)
    1. Domain for 2n2l:
    2. Domain for 2n2m:
    3. Domain for 3qra:
    4. Domains for 3qrc:
      1. 2251484Domain d3qrca_: 3qrc A: [184591]
        automated match to d1orma_
        complexed with c8e, scr
      2. 2251485Domain d3qrcb_: 3qrc B: [184592]
        automated match to d1orma_
        complexed with c8e, scr

More info for Protein automated matches from f.4.1.0: automated matches

Timeline for Protein automated matches from f.4.1.0: automated matches: