SCOPe 2.08: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.08
Class b: All beta proteins [48724] (180 folds)

Fold b.82: Double-stranded beta-helix [51181] (7 superfamilies)
one turn of helix is made by two pairs of antiparallel strands linked with short turns
has appearance of a sandwich of distinct architecture and jelly-roll topology

Superfamily b.82.5: TRAP-like [51219] (2 families)
shorter variant of double-helix; assembles in large ring-like structures containing from 9 to 11 domains
Family b.82.5.1: Trp RNA-binding attenuation protein (TRAP) [51220] (2 proteins)
oligomeric ring consists of 11 single-domain subunits
automatically mapped to Pfam PF02081
Protein automated matches [191248] (4 species)
not a true protein

Species:

Bacillus halodurans [TaxId:86665] [189759] (1 PDB entry)
- Domains for 3zzl:
  1. Domain d3zzla_: 3zzl A: [186667]
    automated match to d1wapa_
    complexed with trp
  2. Domain d3zzlb_: 3zzl B: [186668]
    automated match to d1wapa_
    complexed with trp
  3. Domain d3zzlc_: 3zzl C: [186669]
    automated match to d1wapa_
    complexed with trp
Bacillus licheniformis [TaxId:1402] [189758] (1 PDB entry)
- Domains for 3zte:
  1. Domain d3ztea_: 3zte A: [186543]
    automated match to d1wapa_
    complexed with trp
  2. Domain d3zteb_: 3zte B: [186544]
    automated match to d1wapa_
    complexed with trp
  3. Domain d3ztec_: 3zte C: [186545]
    automated match to d1wapa_
    complexed with trp
  4. Domain d3zted_: 3zte D: [186546]
    automated match to d1wapa_
    complexed with trp
  5. Domain d3ztee_: 3zte E: [186547]
    automated match to d1wapa_
    complexed with trp
  6. Domain d3ztef_: 3zte F: [186548]
    automated match to d1wapa_
    complexed with trp
  7. Domain d3zteg_: 3zte G: [186549]
    automated match to d1wapa_
    complexed with trp
  8. Domain d3zteh_: 3zte H: [186550]
    automated match to d1wapa_
    complexed with trp
  9. Domain d3ztei_: 3zte I: [186551]
    automated match to d1wapa_
    complexed with trp
  10. Domain d3ztej_: 3zte J: [186552]
    automated match to d1wapa_
    complexed with trp
  11. Domain d3ztek_: 3zte K: [186553]
    automated match to d1wapa_
    complexed with trp
  12. Domain d3ztel_: 3zte L: [186554]
    automated match to d1wapa_
    complexed with trp
  13. Domain d3ztem_: 3zte M: [186555]
    automated match to d1wapa_
    complexed with trp
  14. Domain d3zten_: 3zte N: [186556]
    automated match to d1wapa_
    complexed with trp
  15. Domain d3zteo_: 3zte O: [186557]
    automated match to d1wapa_
    complexed with trp
  16. Domain d3ztep_: 3zte P: [186558]
    automated match to d1wapa_
    complexed with trp
  17. Domain d3zteq_: 3zte Q: [186559]
    automated match to d1wapa_
    complexed with trp
  18. Domain d3zter_: 3zte R: [186560]
    automated match to d1wapa_
    complexed with trp
  19. Domain d3ztes_: 3zte S: [186561]
    automated match to d1wapa_
    complexed with trp
  20. Domain d3ztet_: 3zte T: [186562]
    automated match to d1wapa_
    complexed with trp
  21. Domain d3zteu_: 3zte U: [186563]
    automated match to d1wapa_
    complexed with trp
  22. Domain d3ztev_: 3zte V: [186564]
    automated match to d1wapa_
    complexed with trp
Bacillus subtilis [TaxId:1423] [189761] (2 PDB entries)
1. Domains for 3zzq:
  1. Domain d3zzqa_: 3zzq A: [186670]
    automated match to d1wapa_
    complexed with trp
  2. Domain d3zzqb_: 3zzq B: [186671]
    automated match to d1wapa_
    complexed with trp
  3. Domain d3zzqc_: 3zzq C: [186672]
    automated match to d1wapa_
    complexed with trp
  4. Domain d3zzqd_: 3zzq D: [186673]
    automated match to d1wapa_
    complexed with trp
  5. Domain d3zzqe_: 3zzq E: [186674]
    automated match to d1wapa_
    complexed with trp
  6. Domain d3zzqf_: 3zzq F: [186675]
    automated match to d1wapa_
    complexed with trp
2. Domains for 4b27:
  1. Domain d4b27a_: 4b27 A: [193520]
    automated match to d1wapa_
    complexed with trp
  2. Domain d4b27b_: 4b27 B: [201553]
    automated match to d4b27a_
    complexed with trp
  3. Domain d4b27c_: 4b27 C: [201554]
    automated match to d4b27a_
    complexed with trp
  4. Domain d4b27d_: 4b27 D: [201555]
    automated match to d4b27a_
    complexed with trp
  5. Domain d4b27e_: 4b27 E: [201556]
    automated match to d4b27a_
    complexed with trp
  6. Domain d4b27f_: 4b27 F: [201557]
    automated match to d4b27a_
    complexed with trp
Geobacillus stearothermophilus [TaxId:1422] [189760] (1 PDB entry)
- Domains for 3zzs:
  1. Domain d3zzsa_: 3zzs A: [186676]
    automated match to d1c9sg_
    complexed with trp
  2. Domain d3zzsb_: 3zzs B: [186677]
    automated match to d1c9sg_
    complexed with trp
  3. Domain d3zzsc_: 3zzs C: [186678]
    automated match to d1c9sg_
    complexed with trp
  4. Domain d3zzsd_: 3zzs D: [186679]
    automated match to d1c9sg_
    complexed with trp
  5. Domain d3zzse_: 3zzs E: [186680]
    automated match to d1c9sg_
    complexed with trp
  6. Domain d3zzsf_: 3zzs F: [186681]
    automated match to d1c9sg_
    complexed with trp
  7. Domain d3zzsg_: 3zzs G: [186682]
    automated match to d1c9sg_
    complexed with trp
  8. Domain d3zzsh_: 3zzs H: [186683]
    automated match to d1c9sg_
    complexed with trp
  9. Domain d3zzsi_: 3zzs I: [186684]
    automated match to d1c9sg_
    complexed with trp

More info for Protein automated matches from b.82.5.1: Trp RNA-binding attenuation protein (TRAP)

Timeline for Protein automated matches from b.82.5.1: Trp RNA-binding attenuation protein (TRAP):

Protein automated matches from b.82.5.1: Trp RNA-binding attenuation protein (TRAP) first appeared in SCOPe 2.01
Protein automated matches from b.82.5.1: Trp RNA-binding attenuation protein (TRAP) appears in SCOPe 2.07