Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2070014Fold b.82: Double-stranded beta-helix [51181] (7 superfamilies)
    one turn of helix is made by two pairs of antiparallel strands linked with short turns
    has appearance of a sandwich of distinct architecture and jelly-roll topology
  4. 2071633Superfamily b.82.5: TRAP-like [51219] (2 families) (S)
    shorter variant of double-helix; assembles in large ring-like structures containing from 9 to 11 domains
  5. 2071634Family b.82.5.1: Trp RNA-binding attenuation protein (TRAP) [51220] (2 protein domains)
    oligomeric ring consists of 11 single-domain subunits
    automatically mapped to Pfam PF02081
  6. 2071818Protein automated matches [191248] (4 species)
    not a true protein

Species:

  1. 2071819Bacillus halodurans [TaxId:86665] [189759] (1 PDB entry)
  2. 2071823Bacillus licheniformis [TaxId:1402] [189758] (1 PDB entry)
  3. 2071846Bacillus subtilis [TaxId:1423] [189761] (2 PDB entries)
    1. Domains for 3zzq:
      1. 2071847Domain d3zzqa_: 3zzq A: [186670]
        automated match to d1wapa_
        complexed with trp
      2. 2071848Domain d3zzqb_: 3zzq B: [186671]
        automated match to d1wapa_
        complexed with trp
      3. 2071849Domain d3zzqc_: 3zzq C: [186672]
        automated match to d1wapa_
        complexed with trp
      4. 2071850Domain d3zzqd_: 3zzq D: [186673]
        automated match to d1wapa_
        complexed with trp
      5. 2071851Domain d3zzqe_: 3zzq E: [186674]
        automated match to d1wapa_
        complexed with trp
      6. 2071852Domain d3zzqf_: 3zzq F: [186675]
        automated match to d1wapa_
        complexed with trp
    2. Domains for 4b27:
      1. 2071853Domain d4b27a_: 4b27 A: [193520]
        automated match to d1wapa_
        complexed with trp
      2. 2071854Domain d4b27b_: 4b27 B: [201553]
        automated match to d4b27a_
        complexed with trp
      3. 2071855Domain d4b27c_: 4b27 C: [201554]
        automated match to d4b27a_
        complexed with trp
      4. 2071856Domain d4b27d_: 4b27 D: [201555]
        automated match to d4b27a_
        complexed with trp
      5. 2071857Domain d4b27e_: 4b27 E: [201556]
        automated match to d4b27a_
        complexed with trp
      6. 2071858Domain d4b27f_: 4b27 F: [201557]
        automated match to d4b27a_
        complexed with trp
  4. 2071859Geobacillus stearothermophilus [TaxId:1422] [189760] (1 PDB entry)

More info for Protein automated matches from b.82.5.1: Trp RNA-binding attenuation protein (TRAP)

Timeline for Protein automated matches from b.82.5.1: Trp RNA-binding attenuation protein (TRAP):