Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2344607Class b: All beta proteins [48724] (178 folds)
  3. 2376890Fold b.34: SH3-like barrel [50036] (21 superfamilies)
    barrel, partly opened; n*=4, S*=8; meander
    the last strand is interrupted by a turn of 3-10 helix
  4. 2377796Superfamily b.34.4: Electron transport accessory proteins [50090] (5 families) (S)
  5. 2377889Family b.34.4.0: automated matches [191659] (1 protein)
    not a true family
  6. 2377890Protein automated matches [191237] (4 species)
    not a true protein

Species:

  1. 2377891Comamonas testosteroni [TaxId:285] [193572] (4 PDB entries)
    1. Domains for 4fm4:
      1. 2377892Domain d4fm4b_: 4fm4 B: [202047]
        Other proteins in same PDB: d4fm4a_, d4fm4c_, d4fm4e_, d4fm4g_, d4fm4i_, d4fm4k_, d4fm4m_, d4fm4o_
        automated match to d4fm4j_
        complexed with fe, po4
      2. 2377893Domain d4fm4d_: 4fm4 D: [202049]
        Other proteins in same PDB: d4fm4a_, d4fm4c_, d4fm4e_, d4fm4g_, d4fm4i_, d4fm4k_, d4fm4m_, d4fm4o_
        automated match to d4fm4j_
        complexed with fe, po4
      3. 2377894Domain d4fm4f_: 4fm4 F: [202051]
        Other proteins in same PDB: d4fm4a_, d4fm4c_, d4fm4e_, d4fm4g_, d4fm4i_, d4fm4k_, d4fm4m_, d4fm4o_
        automated match to d4fm4j_
        complexed with fe, po4
      4. 2377895Domain d4fm4h_: 4fm4 H: [202053]
        Other proteins in same PDB: d4fm4a_, d4fm4c_, d4fm4e_, d4fm4g_, d4fm4i_, d4fm4k_, d4fm4m_, d4fm4o_
        automated match to d4fm4j_
        complexed with fe, po4
      5. 2377896Domain d4fm4j_: 4fm4 J: [193573]
        Other proteins in same PDB: d4fm4a_, d4fm4c_, d4fm4e_, d4fm4g_, d4fm4i_, d4fm4k_, d4fm4m_, d4fm4o_
        automated match to d3a8gb_
        complexed with fe, po4
      6. 2377897Domain d4fm4l_: 4fm4 L: [202056]
        Other proteins in same PDB: d4fm4a_, d4fm4c_, d4fm4e_, d4fm4g_, d4fm4i_, d4fm4k_, d4fm4m_, d4fm4o_
        automated match to d4fm4j_
        complexed with fe, po4
      7. 2377898Domain d4fm4n_: 4fm4 N: [202058]
        Other proteins in same PDB: d4fm4a_, d4fm4c_, d4fm4e_, d4fm4g_, d4fm4i_, d4fm4k_, d4fm4m_, d4fm4o_
        automated match to d4fm4j_
        complexed with fe, po4
      8. 2377899Domain d4fm4p_: 4fm4 P: [202059]
        Other proteins in same PDB: d4fm4a_, d4fm4c_, d4fm4e_, d4fm4g_, d4fm4i_, d4fm4k_, d4fm4m_, d4fm4o_
        automated match to d4fm4j_
        complexed with fe, po4
    2. Domains for 4zgd:
      1. 2377908Domain d4zgdb_: 4zgd B: [274616]
        automated match to d4fm4b_
        complexed with fe; mutant
      2. 2377909Domain d4zgdd_: 4zgd D: [274615]
        automated match to d4fm4b_
        complexed with fe; mutant
      3. 2377910Domain d4zgdf_: 4zgd F: [274617]
        automated match to d4fm4b_
        complexed with fe; mutant
      4. 2377911Domain d4zgdh_: 4zgd H: [274618]
        automated match to d4fm4b_
        complexed with fe; mutant
      5. 2377912Domain d4zgdj_: 4zgd J: [274619]
        automated match to d4fm4b_
        complexed with fe; mutant
      6. 2377913Domain d4zgdl_: 4zgd L: [274620]
        automated match to d4fm4b_
        complexed with fe; mutant
      7. 2377914Domain d4zgdn_: 4zgd N: [274621]
        automated match to d4fm4b_
        complexed with fe; mutant
      8. 2377915Domain d4zgdp_: 4zgd P: [274622]
        automated match to d4fm4b_
        complexed with fe; mutant
    3. Domains for 4zge:
      1. 2377916Domain d4zgeb_: 4zge B: [274623]
        automated match to d4fm4b_
        complexed with fe; mutant
      2. 2377917Domain d4zged_: 4zge D: [274624]
        automated match to d4fm4b_
        complexed with fe; mutant
      3. 2377918Domain d4zgef_: 4zge F: [274625]
        automated match to d4fm4b_
        complexed with fe; mutant
      4. 2377919Domain d4zgeh_: 4zge H: [274626]
        automated match to d4fm4b_
        complexed with fe; mutant
      5. 2377920Domain d4zgej_: 4zge J: [274627]
        automated match to d4fm4b_
        complexed with fe; mutant
      6. 2377921Domain d4zgel_: 4zge L: [274628]
        automated match to d4fm4b_
        complexed with fe; mutant
      7. 2377922Domain d4zgen_: 4zge N: [274629]
        automated match to d4fm4b_
        complexed with fe; mutant
      8. 2377923Domain d4zgep_: 4zge P: [274630]
        automated match to d4fm4b_
        complexed with fe; mutant
    4. Domains for 4zgj:
      1. 2377900Domain d4zgjb_: 4zgj B: [274631]
        automated match to d4fm4b_
        complexed with fe; mutant
      2. 2377901Domain d4zgjd_: 4zgj D: [274632]
        automated match to d4fm4b_
        complexed with fe; mutant
      3. 2377902Domain d4zgjf_: 4zgj F: [274633]
        automated match to d4fm4b_
        complexed with fe; mutant
      4. 2377903Domain d4zgjh_: 4zgj H: [274634]
        automated match to d4fm4b_
        complexed with fe; mutant
      5. 2377904Domain d4zgjj_: 4zgj J: [274635]
        automated match to d4fm4b_
        complexed with fe; mutant
      6. 2377905Domain d4zgjl_: 4zgj L: [274636]
        automated match to d4fm4b_
        complexed with fe; mutant
      7. 2377906Domain d4zgjn_: 4zgj N: [274637]
        automated match to d4fm4b_
        complexed with fe; mutant
      8. 2377907Domain d4zgjp_: 4zgj P: [274638]
        automated match to d4fm4b_
        complexed with fe; mutant
  2. 2377924Pea (Pisum sativum) [TaxId:3888] [311431] (3 PDB entries)
    1. Domain for 4rku:
    2. Domain for 4xk8:
    3. Domain for 5l8r:
  3. 2377928Pisum sativum [TaxId:4096] [276206] (1 PDB entry)
  4. 2377930Pseudomonas putida [TaxId:303] [189678] (5 PDB entries)
    1. Domains for 3qxe:
      1. 2377935Domain d3qxeb_: 3qxe B: [184679]
        Other proteins in same PDB: d3qxea_, d3qxec_, d3qxee_, d3qxeg_
        automated match to d1ugpb_
        complexed with 3co, gol
      2. 2377936Domain d3qxed_: 3qxe D: [184680]
        Other proteins in same PDB: d3qxea_, d3qxec_, d3qxee_, d3qxeg_
        automated match to d1ugpb_
        complexed with 3co, gol
      3. 2377937Domain d3qxef_: 3qxe F: [184681]
        Other proteins in same PDB: d3qxea_, d3qxec_, d3qxee_, d3qxeg_
        automated match to d1ugpb_
        complexed with 3co, gol
      4. 2377938Domain d3qxeh_: 3qxe H: [184682]
        Other proteins in same PDB: d3qxea_, d3qxec_, d3qxee_, d3qxeg_
        automated match to d1ugpb_
        complexed with 3co, gol
    2. Domains for 3qyg:
      1. 2377939Domain d3qygb_: 3qyg B: [184695]
        Other proteins in same PDB: d3qyga_, d3qygc_, d3qyge_, d3qygg_
        automated match to d1ireb_
        complexed with 3co, gol
      2. 2377940Domain d3qygd_: 3qyg D: [184696]
        Other proteins in same PDB: d3qyga_, d3qygc_, d3qyge_, d3qygg_
        automated match to d1ireb_
        complexed with 3co, gol
      3. 2377941Domain d3qygf_: 3qyg F: [184697]
        Other proteins in same PDB: d3qyga_, d3qygc_, d3qyge_, d3qygg_
        automated match to d1ireb_
        complexed with 3co, gol
      4. 2377942Domain d3qygh_: 3qyg H: [184698]
        Other proteins in same PDB: d3qyga_, d3qygc_, d3qyge_, d3qygg_
        automated match to d1ireb_
        complexed with 3co, gol
    3. Domains for 3qyh:
      1. 2377931Domain d3qyhb_: 3qyh B: [184699]
        Other proteins in same PDB: d3qyha_, d3qyhc_, d3qyhe_, d3qyhg_
        automated match to d1ugpb_
        complexed with 3co
      2. 2377932Domain d3qyhd_: 3qyh D: [184700]
        Other proteins in same PDB: d3qyha_, d3qyhc_, d3qyhe_, d3qyhg_
        automated match to d1ugpb_
        complexed with 3co
      3. 2377933Domain d3qyhf_: 3qyh F: [184701]
        Other proteins in same PDB: d3qyha_, d3qyhc_, d3qyhe_, d3qyhg_
        automated match to d1ugpb_
        complexed with 3co
      4. 2377934Domain d3qyhh_: 3qyh H: [184702]
        Other proteins in same PDB: d3qyha_, d3qyhc_, d3qyhe_, d3qyhg_
        automated match to d1ugpb_
        complexed with 3co
    4. Domains for 3qz5:
      1. 2377947Domain d3qz5b_: 3qz5 B: [184712]
        Other proteins in same PDB: d3qz5a_, d3qz5c_, d3qz5e_, d3qz5g_
        automated match to d1ugpb_
        complexed with 3co, gol
      2. 2377948Domain d3qz5d_: 3qz5 D: [184713]
        Other proteins in same PDB: d3qz5a_, d3qz5c_, d3qz5e_, d3qz5g_
        automated match to d1ugpb_
        complexed with 3co, gol
      3. 2377949Domain d3qz5f_: 3qz5 F: [184714]
        Other proteins in same PDB: d3qz5a_, d3qz5c_, d3qz5e_, d3qz5g_
        automated match to d1ugpb_
        complexed with 3co, gol
      4. 2377950Domain d3qz5h_: 3qz5 H: [184715]
        Other proteins in same PDB: d3qz5a_, d3qz5c_, d3qz5e_, d3qz5g_
        automated match to d1ugpb_
        complexed with 3co, gol
    5. Domains for 3qz9:
      1. 2377943Domain d3qz9b_: 3qz9 B: [184717]
        Other proteins in same PDB: d3qz9a_, d3qz9c_, d3qz9e_, d3qz9g_
        automated match to d1ireb_
        complexed with 3co, gol
      2. 2377944Domain d3qz9d_: 3qz9 D: [184718]
        Other proteins in same PDB: d3qz9a_, d3qz9c_, d3qz9e_, d3qz9g_
        automated match to d1ireb_
        complexed with 3co, gol
      3. 2377945Domain d3qz9f_: 3qz9 F: [184719]
        Other proteins in same PDB: d3qz9a_, d3qz9c_, d3qz9e_, d3qz9g_
        automated match to d1ireb_
        complexed with 3co, gol
      4. 2377946Domain d3qz9h_: 3qz9 H: [184720]
        Other proteins in same PDB: d3qz9a_, d3qz9c_, d3qz9e_, d3qz9g_
        automated match to d1ireb_
        complexed with 3co, gol

More info for Protein automated matches from b.34.4.0: automated matches

Timeline for Protein automated matches from b.34.4.0: automated matches: