Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2045654Fold b.34: SH3-like barrel [50036] (21 superfamilies)
    barrel, partly opened; n*=4, S*=8; meander
    the last strand is interrupted by a turn of 3-10 helix
  4. 2046509Superfamily b.34.4: Electron transport accessory proteins [50090] (5 families) (S)
  5. 2046598Family b.34.4.0: automated matches [191659] (1 protein)
    not a true family
  6. 2046599Protein automated matches [191237] (4 species)
    not a true protein

Species:

  1. 2046600Comamonas testosteroni [TaxId:285] [193572] (4 PDB entries)
    1. Domains for 4fm4:
      1. 2046601Domain d4fm4b_: 4fm4 B: [202047]
        Other proteins in same PDB: d4fm4a_, d4fm4c_, d4fm4e_, d4fm4g_, d4fm4i_, d4fm4k_, d4fm4m_, d4fm4o_
        automated match to d4fm4j_
        complexed with fe, po4
      2. 2046602Domain d4fm4d_: 4fm4 D: [202049]
        Other proteins in same PDB: d4fm4a_, d4fm4c_, d4fm4e_, d4fm4g_, d4fm4i_, d4fm4k_, d4fm4m_, d4fm4o_
        automated match to d4fm4j_
        complexed with fe, po4
      3. 2046603Domain d4fm4f_: 4fm4 F: [202051]
        Other proteins in same PDB: d4fm4a_, d4fm4c_, d4fm4e_, d4fm4g_, d4fm4i_, d4fm4k_, d4fm4m_, d4fm4o_
        automated match to d4fm4j_
        complexed with fe, po4
      4. 2046604Domain d4fm4h_: 4fm4 H: [202053]
        Other proteins in same PDB: d4fm4a_, d4fm4c_, d4fm4e_, d4fm4g_, d4fm4i_, d4fm4k_, d4fm4m_, d4fm4o_
        automated match to d4fm4j_
        complexed with fe, po4
      5. 2046605Domain d4fm4j_: 4fm4 J: [193573]
        Other proteins in same PDB: d4fm4a_, d4fm4c_, d4fm4e_, d4fm4g_, d4fm4i_, d4fm4k_, d4fm4m_, d4fm4o_
        automated match to d3a8gb_
        complexed with fe, po4
      6. 2046606Domain d4fm4l_: 4fm4 L: [202056]
        Other proteins in same PDB: d4fm4a_, d4fm4c_, d4fm4e_, d4fm4g_, d4fm4i_, d4fm4k_, d4fm4m_, d4fm4o_
        automated match to d4fm4j_
        complexed with fe, po4
      7. 2046607Domain d4fm4n_: 4fm4 N: [202058]
        Other proteins in same PDB: d4fm4a_, d4fm4c_, d4fm4e_, d4fm4g_, d4fm4i_, d4fm4k_, d4fm4m_, d4fm4o_
        automated match to d4fm4j_
        complexed with fe, po4
      8. 2046608Domain d4fm4p_: 4fm4 P: [202059]
        Other proteins in same PDB: d4fm4a_, d4fm4c_, d4fm4e_, d4fm4g_, d4fm4i_, d4fm4k_, d4fm4m_, d4fm4o_
        automated match to d4fm4j_
        complexed with fe, po4
    2. Domains for 4zgd:
      1. 2046617Domain d4zgdb_: 4zgd B: [274616]
        automated match to d4fm4b_
        complexed with fe; mutant
      2. 2046618Domain d4zgdd_: 4zgd D: [274615]
        automated match to d4fm4b_
        complexed with fe; mutant
      3. 2046619Domain d4zgdf_: 4zgd F: [274617]
        automated match to d4fm4b_
        complexed with fe; mutant
      4. 2046620Domain d4zgdh_: 4zgd H: [274618]
        automated match to d4fm4b_
        complexed with fe; mutant
      5. 2046621Domain d4zgdj_: 4zgd J: [274619]
        automated match to d4fm4b_
        complexed with fe; mutant
      6. 2046622Domain d4zgdl_: 4zgd L: [274620]
        automated match to d4fm4b_
        complexed with fe; mutant
      7. 2046623Domain d4zgdn_: 4zgd N: [274621]
        automated match to d4fm4b_
        complexed with fe; mutant
      8. 2046624Domain d4zgdp_: 4zgd P: [274622]
        automated match to d4fm4b_
        complexed with fe; mutant
    3. Domains for 4zge:
      1. 2046625Domain d4zgeb_: 4zge B: [274623]
        automated match to d4fm4b_
        complexed with fe; mutant
      2. 2046626Domain d4zged_: 4zge D: [274624]
        automated match to d4fm4b_
        complexed with fe; mutant
      3. 2046627Domain d4zgef_: 4zge F: [274625]
        automated match to d4fm4b_
        complexed with fe; mutant
      4. 2046628Domain d4zgeh_: 4zge H: [274626]
        automated match to d4fm4b_
        complexed with fe; mutant
      5. 2046629Domain d4zgej_: 4zge J: [274627]
        automated match to d4fm4b_
        complexed with fe; mutant
      6. 2046630Domain d4zgel_: 4zge L: [274628]
        automated match to d4fm4b_
        complexed with fe; mutant
      7. 2046631Domain d4zgen_: 4zge N: [274629]
        automated match to d4fm4b_
        complexed with fe; mutant
      8. 2046632Domain d4zgep_: 4zge P: [274630]
        automated match to d4fm4b_
        complexed with fe; mutant
    4. Domains for 4zgj:
      1. 2046609Domain d4zgjb_: 4zgj B: [274631]
        automated match to d4fm4b_
        complexed with fe; mutant
      2. 2046610Domain d4zgjd_: 4zgj D: [274632]
        automated match to d4fm4b_
        complexed with fe; mutant
      3. 2046611Domain d4zgjf_: 4zgj F: [274633]
        automated match to d4fm4b_
        complexed with fe; mutant
      4. 2046612Domain d4zgjh_: 4zgj H: [274634]
        automated match to d4fm4b_
        complexed with fe; mutant
      5. 2046613Domain d4zgjj_: 4zgj J: [274635]
        automated match to d4fm4b_
        complexed with fe; mutant
      6. 2046614Domain d4zgjl_: 4zgj L: [274636]
        automated match to d4fm4b_
        complexed with fe; mutant
      7. 2046615Domain d4zgjn_: 4zgj N: [274637]
        automated match to d4fm4b_
        complexed with fe; mutant
      8. 2046616Domain d4zgjp_: 4zgj P: [274638]
        automated match to d4fm4b_
        complexed with fe; mutant
  2. 2046633Pea (Pisum sativum) [TaxId:3888] [311431] (3 PDB entries)
    1. Domain for 4rku:
    2. Domain for 4xk8:
    3. Domain for 5l8r:
  3. 2046636Pisum sativum [TaxId:4096] [276206] (1 PDB entry)
  4. 2046638Pseudomonas putida [TaxId:303] [189678] (5 PDB entries)
    1. Domains for 3qxe:
      1. 2046643Domain d3qxeb_: 3qxe B: [184679]
        Other proteins in same PDB: d3qxea_, d3qxec_, d3qxee_, d3qxeg_
        automated match to d1ugpb_
        complexed with 3co, gol
      2. 2046644Domain d3qxed_: 3qxe D: [184680]
        Other proteins in same PDB: d3qxea_, d3qxec_, d3qxee_, d3qxeg_
        automated match to d1ugpb_
        complexed with 3co, gol
      3. 2046645Domain d3qxef_: 3qxe F: [184681]
        Other proteins in same PDB: d3qxea_, d3qxec_, d3qxee_, d3qxeg_
        automated match to d1ugpb_
        complexed with 3co, gol
      4. 2046646Domain d3qxeh_: 3qxe H: [184682]
        Other proteins in same PDB: d3qxea_, d3qxec_, d3qxee_, d3qxeg_
        automated match to d1ugpb_
        complexed with 3co, gol
    2. Domains for 3qyg:
      1. 2046647Domain d3qygb_: 3qyg B: [184695]
        Other proteins in same PDB: d3qyga_, d3qygc_, d3qyge_, d3qygg_
        automated match to d1ireb_
        complexed with 3co, gol
      2. 2046648Domain d3qygd_: 3qyg D: [184696]
        Other proteins in same PDB: d3qyga_, d3qygc_, d3qyge_, d3qygg_
        automated match to d1ireb_
        complexed with 3co, gol
      3. 2046649Domain d3qygf_: 3qyg F: [184697]
        Other proteins in same PDB: d3qyga_, d3qygc_, d3qyge_, d3qygg_
        automated match to d1ireb_
        complexed with 3co, gol
      4. 2046650Domain d3qygh_: 3qyg H: [184698]
        Other proteins in same PDB: d3qyga_, d3qygc_, d3qyge_, d3qygg_
        automated match to d1ireb_
        complexed with 3co, gol
    3. Domains for 3qyh:
      1. 2046639Domain d3qyhb_: 3qyh B: [184699]
        Other proteins in same PDB: d3qyha_, d3qyhc_, d3qyhe_, d3qyhg_
        automated match to d1ugpb_
        complexed with 3co
      2. 2046640Domain d3qyhd_: 3qyh D: [184700]
        Other proteins in same PDB: d3qyha_, d3qyhc_, d3qyhe_, d3qyhg_
        automated match to d1ugpb_
        complexed with 3co
      3. 2046641Domain d3qyhf_: 3qyh F: [184701]
        Other proteins in same PDB: d3qyha_, d3qyhc_, d3qyhe_, d3qyhg_
        automated match to d1ugpb_
        complexed with 3co
      4. 2046642Domain d3qyhh_: 3qyh H: [184702]
        Other proteins in same PDB: d3qyha_, d3qyhc_, d3qyhe_, d3qyhg_
        automated match to d1ugpb_
        complexed with 3co
    4. Domains for 3qz5:
      1. 2046655Domain d3qz5b_: 3qz5 B: [184712]
        Other proteins in same PDB: d3qz5a_, d3qz5c_, d3qz5e_, d3qz5g_
        automated match to d1ugpb_
        complexed with 3co, gol
      2. 2046656Domain d3qz5d_: 3qz5 D: [184713]
        Other proteins in same PDB: d3qz5a_, d3qz5c_, d3qz5e_, d3qz5g_
        automated match to d1ugpb_
        complexed with 3co, gol
      3. 2046657Domain d3qz5f_: 3qz5 F: [184714]
        Other proteins in same PDB: d3qz5a_, d3qz5c_, d3qz5e_, d3qz5g_
        automated match to d1ugpb_
        complexed with 3co, gol
      4. 2046658Domain d3qz5h_: 3qz5 H: [184715]
        Other proteins in same PDB: d3qz5a_, d3qz5c_, d3qz5e_, d3qz5g_
        automated match to d1ugpb_
        complexed with 3co, gol
    5. Domains for 3qz9:
      1. 2046651Domain d3qz9b_: 3qz9 B: [184717]
        Other proteins in same PDB: d3qz9a_, d3qz9c_, d3qz9e_, d3qz9g_
        automated match to d1ireb_
        complexed with 3co, gol
      2. 2046652Domain d3qz9d_: 3qz9 D: [184718]
        Other proteins in same PDB: d3qz9a_, d3qz9c_, d3qz9e_, d3qz9g_
        automated match to d1ireb_
        complexed with 3co, gol
      3. 2046653Domain d3qz9f_: 3qz9 F: [184719]
        Other proteins in same PDB: d3qz9a_, d3qz9c_, d3qz9e_, d3qz9g_
        automated match to d1ireb_
        complexed with 3co, gol
      4. 2046654Domain d3qz9h_: 3qz9 H: [184720]
        Other proteins in same PDB: d3qz9a_, d3qz9c_, d3qz9e_, d3qz9g_
        automated match to d1ireb_
        complexed with 3co, gol

More info for Protein automated matches from b.34.4.0: automated matches

Timeline for Protein automated matches from b.34.4.0: automated matches: