Lineage for Protein: automated matches

  1. Root: SCOPe 2.04
  2. 1510239Class b: All beta proteins [48724] (176 folds)
  3. 1563153Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. 1564135Superfamily b.121.6: Group I dsDNA viruses [88648] (2 families) (S)
  5. 1564136Family b.121.6.1: Papovaviridae-like VP [88649] (3 proteins)
  6. 1564176Protein automated matches [191200] (3 species)
    not a true protein

Species:

  1. 1564177Human papillomavirus [TaxId:10566] [189523] (1 PDB entry)
  2. 1564183Human polyomavirus 9 [TaxId:943908] [229433] (7 PDB entries)
    1. Domains for 4mbx:
      1. 1564204Domain d4mbxa_: 4mbx A: [235563]
        automated match to d4mbxe_
        complexed with ca, edo
      2. 1564205Domain d4mbxb_: 4mbx B: [235564]
        automated match to d4mbxe_
        complexed with ca, edo
      3. 1564206Domain d4mbxc_: 4mbx C: [235565]
        automated match to d4mbxe_
        complexed with ca, edo
      4. 1564207Domain d4mbxd_: 4mbx D: [229434]
        automated match to d1vpsb_
        complexed with ca, edo
      5. 1564208Domain d4mbxe_: 4mbx E: [229435]
        automated match to d1vpsb_
        complexed with ca, edo
      6. 1564209Domain d4mbxf_: 4mbx F: [229436]
        automated match to d1vpsb_
        complexed with ca, edo
      7. 1564210Domain d4mbxg_: 4mbx G: [235566]
        automated match to d4mbxd_
        complexed with ca, edo
      8. 1564211Domain d4mbxh_: 4mbx H: [235568]
        automated match to d4mbxd_
        complexed with ca, edo
      9. 1564212Domain d4mbxi_: 4mbx I: [235569]
        automated match to d4mbxd_
        complexed with ca, edo
      10. 1564213Domain d4mbxj_: 4mbx J: [235571]
        automated match to d4mbxe_
        complexed with ca, edo
    2. Domains for 4mby:
      1. 1564184Domain d4mbya_: 4mby A: [235570]
        automated match to d4mbxe_
        protein/DNA complex; complexed with ca, cl, edo, ipa
      2. 1564185Domain d4mbyb_: 4mby B: [235573]
        automated match to d4mbxd_
        protein/DNA complex; complexed with ca, cl, edo, ipa
      3. 1564186Domain d4mbyc_: 4mby C: [235574]
        automated match to d4mbxd_
        protein/DNA complex; complexed with ca, cl, edo, ipa
      4. 1564187Domain d4mbyd_: 4mby D: [235572]
        automated match to d4mbxd_
        protein/DNA complex; complexed with ca, cl, edo, ipa
      5. 1564188Domain d4mbye_: 4mby E: [235576]
        automated match to d4mbxe_
        protein/DNA complex; complexed with ca, cl, edo, ipa
      6. 1564189Domain d4mbyf_: 4mby F: [235575]
        automated match to d4mbxd_
        protein/DNA complex; complexed with ca, cl, edo, ipa
      7. 1564190Domain d4mbyg_: 4mby G: [235577]
        automated match to d4mbxd_
        protein/DNA complex; complexed with ca, cl, edo, ipa
      8. 1564191Domain d4mbyh_: 4mby H: [235579]
        automated match to d4mbxd_
        protein/DNA complex; complexed with ca, cl, edo, ipa
      9. 1564192Domain d4mbyi_: 4mby I: [235578]
        automated match to d4mbxd_
        protein/DNA complex; complexed with ca, cl, edo, ipa
      10. 1564193Domain d4mbyj_: 4mby J: [235580]
        automated match to d4mbxd_
        protein/DNA complex; complexed with ca, cl, edo, ipa
    3. Domains for 4mbz:
      1. 1564194Domain d4mbza_: 4mbz A: [235581]
        automated match to d4mbxe_
        protein/DNA complex; complexed with ca, cl, edo, ipa
      2. 1564195Domain d4mbzb_: 4mbz B: [235582]
        automated match to d4mbxd_
        protein/DNA complex; complexed with ca, cl, edo, ipa
      3. 1564196Domain d4mbzc_: 4mbz C: [235583]
        automated match to d4mbxd_
        protein/DNA complex; complexed with ca, cl, edo, ipa
      4. 1564197Domain d4mbzd_: 4mbz D: [235584]
        automated match to d4mbxd_
        protein/DNA complex; complexed with ca, cl, edo, ipa
      5. 1564198Domain d4mbze_: 4mbz E: [235585]
        automated match to d4mbxe_
        protein/DNA complex; complexed with ca, cl, edo, ipa
      6. 1564199Domain d4mbzf_: 4mbz F: [235587]
        automated match to d4mbxd_
        protein/DNA complex; complexed with ca, cl, edo, ipa
      7. 1564200Domain d4mbzg_: 4mbz G: [235586]
        automated match to d4mbxd_
        protein/DNA complex; complexed with ca, cl, edo, ipa
      8. 1564201Domain d4mbzh_: 4mbz H: [235588]
        automated match to d4mbxd_
        protein/DNA complex; complexed with ca, cl, edo, ipa
      9. 1564202Domain d4mbzi_: 4mbz I: [235590]
        automated match to d4mbxd_
        protein/DNA complex; complexed with ca, cl, edo, ipa
      10. 1564203Domain d4mbzj_: 4mbz J: [235589]
        automated match to d4mbxe_
        protein/DNA complex; complexed with ca, cl, edo, ipa
    4. Domains for 4poq:
      1. 1564224Domain d4poqa_: 4poq A: [254069]
        automated match to d4posb_
        complexed with ca, edo, ipa
      2. 1564225Domain d4poqb_: 4poq B: [254070]
        automated match to d4posb_
        complexed with ca, edo, ipa
      3. 1564226Domain d4poqc_: 4poq C: [254071]
        automated match to d4posb_
        complexed with ca, edo, ipa
      4. 1564227Domain d4poqd_: 4poq D: [254072]
        automated match to d4posb_
        complexed with ca, edo, ipa
      5. 1564228Domain d4poqe_: 4poq E: [254073]
        automated match to d4posb_
        complexed with ca, edo, ipa
      6. 1564229Domain d4poqf_: 4poq F: [254074]
        automated match to d4posb_
        complexed with ca, edo, ipa
      7. 1564230Domain d4poqg_: 4poq G: [254075]
        automated match to d4posb_
        complexed with ca, edo, ipa
      8. 1564231Domain d4poqh_: 4poq H: [254076]
        automated match to d4posb_
        complexed with ca, edo, ipa
      9. 1564232Domain d4poqi_: 4poq I: [254077]
        automated match to d4posb_
        complexed with ca, edo, ipa
      10. 1564233Domain d4poqj_: 4poq J: [254078]
        automated match to d4posb_
        complexed with ca, edo, ipa
    5. Domains for 4por:
      1. 1564234Domain d4pora_: 4por A: [254079]
        automated match to d4posb_
        complexed with ca, edo, ipa
      2. 1564235Domain d4porb_: 4por B: [254080]
        automated match to d4posb_
        complexed with ca, edo, ipa
      3. 1564236Domain d4porc_: 4por C: [254081]
        automated match to d4posb_
        complexed with ca, edo, ipa
      4. 1564237Domain d4pord_: 4por D: [254082]
        automated match to d4posb_
        complexed with ca, edo, ipa
      5. 1564238Domain d4pore_: 4por E: [254083]
        automated match to d4posb_
        complexed with ca, edo, ipa
      6. 1564239Domain d4porf_: 4por F: [254084]
        automated match to d4posb_
        complexed with ca, edo, ipa
      7. 1564240Domain d4porg_: 4por G: [254085]
        automated match to d4posb_
        complexed with ca, edo, ipa
      8. 1564241Domain d4porh_: 4por H: [254086]
        automated match to d4posb_
        complexed with ca, edo, ipa
      9. 1564242Domain d4pori_: 4por I: [254087]
        automated match to d4posb_
        complexed with ca, edo, ipa
      10. 1564243Domain d4porj_: 4por J: [254088]
        automated match to d4posb_
        complexed with ca, edo, ipa
    6. Domains for 4pos:
      1. 1564214Domain d4posa_: 4pos A: [240734]
        automated match to d4posb_
        complexed with ca, edo, ipa
      2. 1564215Domain d4posb_: 4pos B: [238489]
        automated match to d1vpsb_
        complexed with ca, edo, ipa
      3. 1564216Domain d4posc_: 4pos C: [240735]
        automated match to d4posb_
        complexed with ca, edo, ipa
      4. 1564217Domain d4posd_: 4pos D: [240736]
        automated match to d4posb_
        complexed with ca, edo, ipa
      5. 1564218Domain d4pose_: 4pos E: [240737]
        automated match to d4posb_
        complexed with ca, edo, ipa
      6. 1564219Domain d4posf_: 4pos F: [240738]
        automated match to d4posb_
        complexed with ca, edo, ipa
      7. 1564220Domain d4posg_: 4pos G: [240739]
        automated match to d4posb_
        complexed with ca, edo, ipa
      8. 1564221Domain d4posh_: 4pos H: [240740]
        automated match to d4posb_
        complexed with ca, edo, ipa
      9. 1564222Domain d4posi_: 4pos I: [240741]
        automated match to d4posb_
        complexed with ca, edo, ipa
      10. 1564223Domain d4posj_: 4pos J: [240742]
        automated match to d4posb_
        complexed with ca, edo, ipa
    7. Domains for 4pot:
      1. 1564244Domain d4pota_: 4pot A: [254089]
        automated match to d4posb_
        complexed with ca, edo, ipa
      2. 1564245Domain d4potb_: 4pot B: [254090]
        automated match to d4posb_
        complexed with ca, edo, ipa
      3. 1564246Domain d4potc_: 4pot C: [254091]
        automated match to d4posb_
        complexed with ca, edo, ipa
      4. 1564247Domain d4potd_: 4pot D: [254092]
        automated match to d4posb_
        complexed with ca, edo, ipa
      5. 1564248Domain d4pote_: 4pot E: [254093]
        automated match to d4posb_
        complexed with ca, edo, ipa
      6. 1564249Domain d4potf_: 4pot F: [254094]
        automated match to d4posb_
        complexed with ca, edo, ipa
      7. 1564250Domain d4potg_: 4pot G: [254095]
        automated match to d4posb_
        complexed with ca, edo, ipa
      8. 1564251Domain d4poth_: 4pot H: [254096]
        automated match to d4posb_
        complexed with ca, edo, ipa
      9. 1564252Domain d4poti_: 4pot I: [254097]
        automated match to d4posb_
        complexed with ca, edo, ipa
      10. 1564253Domain d4potj_: 4pot J: [254098]
        automated match to d4posb_
        complexed with ca, edo, ipa
  3. 1564254Merkel cell polyomavirus [TaxId:493803] [226460] (4 PDB entries)
    1. Domains for 4fmg:
      1. 1564295Domain d4fmga_: 4fmg A: [221283]
        automated match to d1vpsb_
        complexed with cl, gol
      2. 1564296Domain d4fmgb_: 4fmg B: [221284]
        automated match to d1vpsb_
        complexed with cl, gol
      3. 1564297Domain d4fmgc_: 4fmg C: [221285]
        automated match to d1vpsb_
        complexed with cl, gol
      4. 1564298Domain d4fmgd_: 4fmg D: [221286]
        automated match to d1vpsb_
        complexed with cl, gol
      5. 1564299Domain d4fmge_: 4fmg E: [221287]
        automated match to d1vpsb_
        complexed with cl, gol
      6. 1564300Domain d4fmgf_: 4fmg F: [221288]
        automated match to d1vpsb_
        complexed with cl, gol
      7. 1564301Domain d4fmgg_: 4fmg G: [221289]
        automated match to d1vpsb_
        complexed with cl, gol
      8. 1564302Domain d4fmgh_: 4fmg H: [221290]
        automated match to d1vpsb_
        complexed with cl, gol
      9. 1564303Domain d4fmgi_: 4fmg I: [221291]
        automated match to d1vpsb_
        complexed with cl, gol
      10. 1564304Domain d4fmgj_: 4fmg J: [221292]
        automated match to d1vpsb_
        complexed with cl, gol
      11. 1564305Domain d4fmgk_: 4fmg K: [221293]
        automated match to d1vpsb_
        complexed with cl, gol
      12. 1564306Domain d4fmgl_: 4fmg L: [221294]
        automated match to d1vpsb_
        complexed with cl, gol
      13. 1564307Domain d4fmgm_: 4fmg M: [221295]
        automated match to d1vpsb_
        complexed with cl, gol
      14. 1564308Domain d4fmgn_: 4fmg N: [221296]
        automated match to d1vpsb_
        complexed with cl, gol
      15. 1564309Domain d4fmgo_: 4fmg O: [221297]
        automated match to d1vpsb_
        complexed with cl, gol
      16. 1564310Domain d4fmgp_: 4fmg P: [221298]
        automated match to d1vpsb_
        complexed with cl, gol
      17. 1564311Domain d4fmgq_: 4fmg Q: [221299]
        automated match to d1vpsb_
        complexed with cl, gol
      18. 1564312Domain d4fmgr_: 4fmg R: [221300]
        automated match to d1vpsb_
        complexed with cl, gol
      19. 1564313Domain d4fmgs_: 4fmg S: [221301]
        automated match to d1vpsb_
        complexed with cl, gol
      20. 1564314Domain d4fmgt_: 4fmg T: [221302]
        automated match to d1vpsb_
        complexed with cl, gol
    2. Domains for 4fmh:
      1. 1564275Domain d4fmha_: 4fmh A: [221303]
        automated match to d1vpsb_
        complexed with cl, gol
      2. 1564276Domain d4fmhb_: 4fmh B: [221304]
        automated match to d1vpsb_
        complexed with cl, gol
      3. 1564277Domain d4fmhc_: 4fmh C: [221305]
        automated match to d1vpsb_
        complexed with cl, gol
      4. 1564278Domain d4fmhd_: 4fmh D: [221306]
        automated match to d1vpsb_
        complexed with cl, gol
      5. 1564279Domain d4fmhe_: 4fmh E: [221307]
        automated match to d1vpsb_
        complexed with cl, gol
      6. 1564280Domain d4fmhf_: 4fmh F: [221308]
        automated match to d1vpsb_
        complexed with cl, gol
      7. 1564281Domain d4fmhg_: 4fmh G: [221309]
        automated match to d1vpsb_
        complexed with cl, gol
      8. 1564282Domain d4fmhh_: 4fmh H: [221310]
        automated match to d1vpsb_
        complexed with cl, gol
      9. 1564283Domain d4fmhi_: 4fmh I: [221311]
        automated match to d1vpsb_
        complexed with cl, gol
      10. 1564284Domain d4fmhj_: 4fmh J: [221312]
        automated match to d1vpsb_
        complexed with cl, gol
      11. 1564285Domain d4fmhk_: 4fmh K: [221313]
        automated match to d1vpsb_
        complexed with cl, gol
      12. 1564286Domain d4fmhl_: 4fmh L: [221314]
        automated match to d1vpsb_
        complexed with cl, gol
      13. 1564287Domain d4fmhm_: 4fmh M: [221315]
        automated match to d1vpsb_
        complexed with cl, gol
      14. 1564288Domain d4fmhn_: 4fmh N: [221316]
        automated match to d1vpsb_
        complexed with cl, gol
      15. 1564289Domain d4fmho_: 4fmh O: [221317]
        automated match to d1vpsb_
        complexed with cl, gol
      16. 1564290Domain d4fmhp_: 4fmh P: [221318]
        automated match to d1vpsb_
        complexed with cl, gol
      17. 1564291Domain d4fmhq_: 4fmh Q: [221319]
        automated match to d1vpsb_
        complexed with cl, gol
      18. 1564292Domain d4fmhr_: 4fmh R: [221320]
        automated match to d1vpsb_
        complexed with cl, gol
      19. 1564293Domain d4fmhs_: 4fmh S: [221321]
        automated match to d1vpsb_
        complexed with cl, gol
      20. 1564294Domain d4fmht_: 4fmh T: [221322]
        automated match to d1vpsb_
        complexed with cl, gol
    3. Domains for 4fmi:
      1. 1564255Domain d4fmia_: 4fmi A: [221323]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      2. 1564256Domain d4fmib_: 4fmi B: [221324]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      3. 1564257Domain d4fmic_: 4fmi C: [221325]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      4. 1564258Domain d4fmid_: 4fmi D: [221326]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      5. 1564259Domain d4fmie_: 4fmi E: [221327]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      6. 1564260Domain d4fmif_: 4fmi F: [221328]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      7. 1564261Domain d4fmig_: 4fmi G: [221329]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      8. 1564262Domain d4fmih_: 4fmi H: [221330]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      9. 1564263Domain d4fmii_: 4fmi I: [221331]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      10. 1564264Domain d4fmij_: 4fmi J: [221332]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      11. 1564265Domain d4fmik_: 4fmi K: [221333]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      12. 1564266Domain d4fmil_: 4fmi L: [221334]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      13. 1564267Domain d4fmim_: 4fmi M: [221335]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      14. 1564268Domain d4fmin_: 4fmi N: [221336]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      15. 1564269Domain d4fmio_: 4fmi O: [221337]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      16. 1564270Domain d4fmip_: 4fmi P: [221338]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      17. 1564271Domain d4fmiq_: 4fmi Q: [221339]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      18. 1564272Domain d4fmir_: 4fmi R: [221340]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      19. 1564273Domain d4fmis_: 4fmi S: [221341]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      20. 1564274Domain d4fmit_: 4fmi T: [221342]
        automated match to d1vpsb_
        complexed with cl, gol, sia
    4. Domains for 4fmj:
      1. 1564315Domain d4fmja_: 4fmj A: [221343]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      2. 1564316Domain d4fmjb_: 4fmj B: [221344]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      3. 1564317Domain d4fmjc_: 4fmj C: [221345]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      4. 1564318Domain d4fmjd_: 4fmj D: [221346]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      5. 1564319Domain d4fmje_: 4fmj E: [221347]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      6. 1564320Domain d4fmjf_: 4fmj F: [221348]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      7. 1564321Domain d4fmjg_: 4fmj G: [221349]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      8. 1564322Domain d4fmjh_: 4fmj H: [221350]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      9. 1564323Domain d4fmji_: 4fmj I: [221351]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      10. 1564324Domain d4fmjj_: 4fmj J: [221352]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      11. 1564325Domain d4fmjk_: 4fmj K: [221353]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      12. 1564326Domain d4fmjl_: 4fmj L: [221354]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      13. 1564327Domain d4fmjm_: 4fmj M: [221355]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      14. 1564328Domain d4fmjn_: 4fmj N: [221356]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      15. 1564329Domain d4fmjo_: 4fmj O: [221357]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      16. 1564330Domain d4fmjp_: 4fmj P: [221358]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      17. 1564331Domain d4fmjq_: 4fmj Q: [221359]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      18. 1564332Domain d4fmjr_: 4fmj R: [221360]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      19. 1564333Domain d4fmjs_: 4fmj S: [221361]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      20. 1564334Domain d4fmjt_: 4fmj T: [221362]
        automated match to d1vpsb_
        complexed with cl, gol, sia

More info for Protein automated matches from b.121.6.1: Papovaviridae-like VP

Timeline for Protein automated matches from b.121.6.1: Papovaviridae-like VP: