Lineage for Protein: automated matches

  1. Root: SCOPe 2.03
  2. 1287432Class b: All beta proteins [48724] (174 folds)
  3. 1334432Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. 1335234Superfamily b.121.6: Group I dsDNA viruses [88648] (2 families) (S)
  5. 1335235Family b.121.6.1: Papovaviridae-like VP [88649] (3 proteins)
  6. 1335275Protein automated matches [191200] (3 species)
    not a true protein

Species:

  1. 1335276Human papillomavirus [TaxId:10566] [189523] (1 PDB entry)
  2. 1335282Human polyomavirus 9 [TaxId:943908] [229433] (4 PDB entries)
    1. Domains for 4mbx:
      1. 1335303Domain d4mbxa_: 4mbx A: [235563]
        automated match to d4mbxe_
        complexed with ca, edo
      2. 1335304Domain d4mbxb_: 4mbx B: [235564]
        automated match to d4mbxe_
        complexed with ca, edo
      3. 1335305Domain d4mbxc_: 4mbx C: [235565]
        automated match to d4mbxe_
        complexed with ca, edo
      4. 1335306Domain d4mbxd_: 4mbx D: [229434]
        automated match to d1vpsb_
        complexed with ca, edo
      5. 1335307Domain d4mbxe_: 4mbx E: [229435]
        automated match to d1vpsb_
        complexed with ca, edo
      6. 1335308Domain d4mbxf_: 4mbx F: [229436]
        automated match to d1vpsb_
        complexed with ca, edo
      7. 1335309Domain d4mbxg_: 4mbx G: [235566]
        automated match to d4mbxd_
        complexed with ca, edo
      8. 1335310Domain d4mbxh_: 4mbx H: [235568]
        automated match to d4mbxd_
        complexed with ca, edo
      9. 1335311Domain d4mbxi_: 4mbx I: [235569]
        automated match to d4mbxd_
        complexed with ca, edo
      10. 1335312Domain d4mbxj_: 4mbx J: [235571]
        automated match to d4mbxe_
        complexed with ca, edo
    2. Domains for 4mby:
      1. 1335283Domain d4mbya_: 4mby A: [235570]
        automated match to d4mbxe_
        protein/DNA complex; complexed with ca, cl, edo, ipa
      2. 1335284Domain d4mbyb_: 4mby B: [235573]
        automated match to d4mbxd_
        protein/DNA complex; complexed with ca, cl, edo, ipa
      3. 1335285Domain d4mbyc_: 4mby C: [235574]
        automated match to d4mbxd_
        protein/DNA complex; complexed with ca, cl, edo, ipa
      4. 1335286Domain d4mbyd_: 4mby D: [235572]
        automated match to d4mbxd_
        protein/DNA complex; complexed with ca, cl, edo, ipa
      5. 1335287Domain d4mbye_: 4mby E: [235576]
        automated match to d4mbxe_
        protein/DNA complex; complexed with ca, cl, edo, ipa
      6. 1335288Domain d4mbyf_: 4mby F: [235575]
        automated match to d4mbxd_
        protein/DNA complex; complexed with ca, cl, edo, ipa
      7. 1335289Domain d4mbyg_: 4mby G: [235577]
        automated match to d4mbxd_
        protein/DNA complex; complexed with ca, cl, edo, ipa
      8. 1335290Domain d4mbyh_: 4mby H: [235579]
        automated match to d4mbxd_
        protein/DNA complex; complexed with ca, cl, edo, ipa
      9. 1335291Domain d4mbyi_: 4mby I: [235578]
        automated match to d4mbxd_
        protein/DNA complex; complexed with ca, cl, edo, ipa
      10. 1335292Domain d4mbyj_: 4mby J: [235580]
        automated match to d4mbxd_
        protein/DNA complex; complexed with ca, cl, edo, ipa
    3. Domains for 4mbz:
      1. 1335293Domain d4mbza_: 4mbz A: [235581]
        automated match to d4mbxe_
        protein/DNA complex; complexed with ca, cl, edo, ipa
      2. 1335294Domain d4mbzb_: 4mbz B: [235582]
        automated match to d4mbxd_
        protein/DNA complex; complexed with ca, cl, edo, ipa
      3. 1335295Domain d4mbzc_: 4mbz C: [235583]
        automated match to d4mbxd_
        protein/DNA complex; complexed with ca, cl, edo, ipa
      4. 1335296Domain d4mbzd_: 4mbz D: [235584]
        automated match to d4mbxd_
        protein/DNA complex; complexed with ca, cl, edo, ipa
      5. 1335297Domain d4mbze_: 4mbz E: [235585]
        automated match to d4mbxe_
        protein/DNA complex; complexed with ca, cl, edo, ipa
      6. 1335298Domain d4mbzf_: 4mbz F: [235587]
        automated match to d4mbxd_
        protein/DNA complex; complexed with ca, cl, edo, ipa
      7. 1335299Domain d4mbzg_: 4mbz G: [235586]
        automated match to d4mbxd_
        protein/DNA complex; complexed with ca, cl, edo, ipa
      8. 1335300Domain d4mbzh_: 4mbz H: [235588]
        automated match to d4mbxd_
        protein/DNA complex; complexed with ca, cl, edo, ipa
      9. 1335301Domain d4mbzi_: 4mbz I: [235590]
        automated match to d4mbxd_
        protein/DNA complex; complexed with ca, cl, edo, ipa
      10. 1335302Domain d4mbzj_: 4mbz J: [235589]
        automated match to d4mbxe_
        protein/DNA complex; complexed with ca, cl, edo, ipa
    4. Domain for 4pos:
  3. 1335314Merkel cell polyomavirus [TaxId:493803] [226460] (4 PDB entries)
    1. Domains for 4fmg:
      1. 1335355Domain d4fmga_: 4fmg A: [221283]
        automated match to d1vpsb_
        complexed with cl, gol
      2. 1335356Domain d4fmgb_: 4fmg B: [221284]
        automated match to d1vpsb_
        complexed with cl, gol
      3. 1335357Domain d4fmgc_: 4fmg C: [221285]
        automated match to d1vpsb_
        complexed with cl, gol
      4. 1335358Domain d4fmgd_: 4fmg D: [221286]
        automated match to d1vpsb_
        complexed with cl, gol
      5. 1335359Domain d4fmge_: 4fmg E: [221287]
        automated match to d1vpsb_
        complexed with cl, gol
      6. 1335360Domain d4fmgf_: 4fmg F: [221288]
        automated match to d1vpsb_
        complexed with cl, gol
      7. 1335361Domain d4fmgg_: 4fmg G: [221289]
        automated match to d1vpsb_
        complexed with cl, gol
      8. 1335362Domain d4fmgh_: 4fmg H: [221290]
        automated match to d1vpsb_
        complexed with cl, gol
      9. 1335363Domain d4fmgi_: 4fmg I: [221291]
        automated match to d1vpsb_
        complexed with cl, gol
      10. 1335364Domain d4fmgj_: 4fmg J: [221292]
        automated match to d1vpsb_
        complexed with cl, gol
      11. 1335365Domain d4fmgk_: 4fmg K: [221293]
        automated match to d1vpsb_
        complexed with cl, gol
      12. 1335366Domain d4fmgl_: 4fmg L: [221294]
        automated match to d1vpsb_
        complexed with cl, gol
      13. 1335367Domain d4fmgm_: 4fmg M: [221295]
        automated match to d1vpsb_
        complexed with cl, gol
      14. 1335368Domain d4fmgn_: 4fmg N: [221296]
        automated match to d1vpsb_
        complexed with cl, gol
      15. 1335369Domain d4fmgo_: 4fmg O: [221297]
        automated match to d1vpsb_
        complexed with cl, gol
      16. 1335370Domain d4fmgp_: 4fmg P: [221298]
        automated match to d1vpsb_
        complexed with cl, gol
      17. 1335371Domain d4fmgq_: 4fmg Q: [221299]
        automated match to d1vpsb_
        complexed with cl, gol
      18. 1335372Domain d4fmgr_: 4fmg R: [221300]
        automated match to d1vpsb_
        complexed with cl, gol
      19. 1335373Domain d4fmgs_: 4fmg S: [221301]
        automated match to d1vpsb_
        complexed with cl, gol
      20. 1335374Domain d4fmgt_: 4fmg T: [221302]
        automated match to d1vpsb_
        complexed with cl, gol
    2. Domains for 4fmh:
      1. 1335335Domain d4fmha_: 4fmh A: [221303]
        automated match to d1vpsb_
        complexed with cl, gol
      2. 1335336Domain d4fmhb_: 4fmh B: [221304]
        automated match to d1vpsb_
        complexed with cl, gol
      3. 1335337Domain d4fmhc_: 4fmh C: [221305]
        automated match to d1vpsb_
        complexed with cl, gol
      4. 1335338Domain d4fmhd_: 4fmh D: [221306]
        automated match to d1vpsb_
        complexed with cl, gol
      5. 1335339Domain d4fmhe_: 4fmh E: [221307]
        automated match to d1vpsb_
        complexed with cl, gol
      6. 1335340Domain d4fmhf_: 4fmh F: [221308]
        automated match to d1vpsb_
        complexed with cl, gol
      7. 1335341Domain d4fmhg_: 4fmh G: [221309]
        automated match to d1vpsb_
        complexed with cl, gol
      8. 1335342Domain d4fmhh_: 4fmh H: [221310]
        automated match to d1vpsb_
        complexed with cl, gol
      9. 1335343Domain d4fmhi_: 4fmh I: [221311]
        automated match to d1vpsb_
        complexed with cl, gol
      10. 1335344Domain d4fmhj_: 4fmh J: [221312]
        automated match to d1vpsb_
        complexed with cl, gol
      11. 1335345Domain d4fmhk_: 4fmh K: [221313]
        automated match to d1vpsb_
        complexed with cl, gol
      12. 1335346Domain d4fmhl_: 4fmh L: [221314]
        automated match to d1vpsb_
        complexed with cl, gol
      13. 1335347Domain d4fmhm_: 4fmh M: [221315]
        automated match to d1vpsb_
        complexed with cl, gol
      14. 1335348Domain d4fmhn_: 4fmh N: [221316]
        automated match to d1vpsb_
        complexed with cl, gol
      15. 1335349Domain d4fmho_: 4fmh O: [221317]
        automated match to d1vpsb_
        complexed with cl, gol
      16. 1335350Domain d4fmhp_: 4fmh P: [221318]
        automated match to d1vpsb_
        complexed with cl, gol
      17. 1335351Domain d4fmhq_: 4fmh Q: [221319]
        automated match to d1vpsb_
        complexed with cl, gol
      18. 1335352Domain d4fmhr_: 4fmh R: [221320]
        automated match to d1vpsb_
        complexed with cl, gol
      19. 1335353Domain d4fmhs_: 4fmh S: [221321]
        automated match to d1vpsb_
        complexed with cl, gol
      20. 1335354Domain d4fmht_: 4fmh T: [221322]
        automated match to d1vpsb_
        complexed with cl, gol
    3. Domains for 4fmi:
      1. 1335315Domain d4fmia_: 4fmi A: [221323]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      2. 1335316Domain d4fmib_: 4fmi B: [221324]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      3. 1335317Domain d4fmic_: 4fmi C: [221325]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      4. 1335318Domain d4fmid_: 4fmi D: [221326]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      5. 1335319Domain d4fmie_: 4fmi E: [221327]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      6. 1335320Domain d4fmif_: 4fmi F: [221328]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      7. 1335321Domain d4fmig_: 4fmi G: [221329]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      8. 1335322Domain d4fmih_: 4fmi H: [221330]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      9. 1335323Domain d4fmii_: 4fmi I: [221331]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      10. 1335324Domain d4fmij_: 4fmi J: [221332]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      11. 1335325Domain d4fmik_: 4fmi K: [221333]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      12. 1335326Domain d4fmil_: 4fmi L: [221334]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      13. 1335327Domain d4fmim_: 4fmi M: [221335]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      14. 1335328Domain d4fmin_: 4fmi N: [221336]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      15. 1335329Domain d4fmio_: 4fmi O: [221337]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      16. 1335330Domain d4fmip_: 4fmi P: [221338]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      17. 1335331Domain d4fmiq_: 4fmi Q: [221339]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      18. 1335332Domain d4fmir_: 4fmi R: [221340]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      19. 1335333Domain d4fmis_: 4fmi S: [221341]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      20. 1335334Domain d4fmit_: 4fmi T: [221342]
        automated match to d1vpsb_
        complexed with cl, gol, sia
    4. Domains for 4fmj:
      1. 1335375Domain d4fmja_: 4fmj A: [221343]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      2. 1335376Domain d4fmjb_: 4fmj B: [221344]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      3. 1335377Domain d4fmjc_: 4fmj C: [221345]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      4. 1335378Domain d4fmjd_: 4fmj D: [221346]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      5. 1335379Domain d4fmje_: 4fmj E: [221347]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      6. 1335380Domain d4fmjf_: 4fmj F: [221348]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      7. 1335381Domain d4fmjg_: 4fmj G: [221349]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      8. 1335382Domain d4fmjh_: 4fmj H: [221350]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      9. 1335383Domain d4fmji_: 4fmj I: [221351]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      10. 1335384Domain d4fmjj_: 4fmj J: [221352]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      11. 1335385Domain d4fmjk_: 4fmj K: [221353]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      12. 1335386Domain d4fmjl_: 4fmj L: [221354]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      13. 1335387Domain d4fmjm_: 4fmj M: [221355]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      14. 1335388Domain d4fmjn_: 4fmj N: [221356]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      15. 1335389Domain d4fmjo_: 4fmj O: [221357]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      16. 1335390Domain d4fmjp_: 4fmj P: [221358]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      17. 1335391Domain d4fmjq_: 4fmj Q: [221359]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      18. 1335392Domain d4fmjr_: 4fmj R: [221360]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      19. 1335393Domain d4fmjs_: 4fmj S: [221361]
        automated match to d1vpsb_
        complexed with cl, gol, sia
      20. 1335394Domain d4fmjt_: 4fmj T: [221362]
        automated match to d1vpsb_
        complexed with cl, gol, sia

More info for Protein automated matches from b.121.6.1: Papovaviridae-like VP

Timeline for Protein automated matches from b.121.6.1: Papovaviridae-like VP: