Lineage for Protein: automated matches

  1. Root: SCOPe 2.04
  2. 1510239Class b: All beta proteins [48724] (176 folds)
  3. 1560503Fold b.85: beta-clip [51268] (7 superfamilies)
    double-stranded ribbon sharply bent in two places; the ribbon ends form incomplete barrel; jelly-roll
  4. 1560650Superfamily b.85.4: dUTPase-like [51283] (2 families) (S)
    forms tight trimer through an additional beta-sheet in each subunit
    subunit beta-sheets are orthogonally packed around the three-fold axis
  5. 1560843Family b.85.4.0: automated matches [191644] (1 protein)
    not a true family
  6. 1560844Protein automated matches [191182] (11 species)
    not a true protein

Species:

  1. 1560845Bacillus subtilis [TaxId:1423] [189439] (11 PDB entries)
    1. Domains for 2baz:
      1. 1560919Domain d2baza_: 2baz A: [197782]
        automated match to d2bazc_
      2. 1560920Domain d2bazb_: 2baz B: [197783]
        automated match to d2bazc_
      3. 1560921Domain d2bazc_: 2baz C: [193858]
        automated match to d2xcea_
    2. Domains for 2xcd:
      1. 1560871Domain d2xcda_: 2xcd A: [170020]
        automated match to d1sixa_
        complexed with cl, gol, mg, na
      2. 1560872Domain d2xcdb_: 2xcd B: [170021]
        automated match to d1sixa_
        complexed with cl, gol, mg, na
      3. 1560873Domain d2xcdc_: 2xcd C: [170022]
        automated match to d1sixa_
        complexed with cl, gol, mg, na
      4. 1560874Domain d2xcdd_: 2xcd D: [170023]
        automated match to d1sixa_
        complexed with cl, gol, mg, na
      5. 1560875Domain d2xcde_: 2xcd E: [170024]
        automated match to d1sixa_
        complexed with cl, gol, mg, na
      6. 1560876Domain d2xcdf_: 2xcd F: [170025]
        automated match to d1sixa_
        complexed with cl, gol, mg, na
    3. Domains for 2xce:
      1. 1560859Domain d2xcea_: 2xce A: [170026]
        automated match to d1sixa_
        complexed with ca, dup, gol
      2. 1560860Domain d2xceb_: 2xce B: [170027]
        automated match to d1sixa_
        complexed with ca, dup, gol
      3. 1560861Domain d2xcec_: 2xce C: [170028]
        automated match to d1sixa_
        complexed with ca, dup, gol
      4. 1560862Domain d2xced_: 2xce D: [170029]
        automated match to d1sixa_
        complexed with ca, dup, gol
      5. 1560863Domain d2xcee_: 2xce E: [170030]
        automated match to d1sixa_
        complexed with ca, dup, gol
      6. 1560864Domain d2xcef_: 2xce F: [170031]
        automated match to d1sixa_
        complexed with ca, dup, gol
    4. Domains for 2xx6:
      1. 1560855Domain d2xx6a_: 2xx6 A: [207389]
        automated match to d2bazc_
      2. 1560856Domain d2xx6b_: 2xx6 B: [207390]
        automated match to d2bazc_
      3. 1560857Domain d2xx6c_: 2xx6 C: [207391]
        automated match to d2bazc_
      4. 1560858Domain d2xx6d_: 2xx6 D: [207392]
        automated match to d2bazc_
    5. Domains for 2xy3:
      1. 1560922Domain d2xy3a_: 2xy3 A: [207432]
        automated match to d2bazc_
        complexed with dup, mg
      2. 1560923Domain d2xy3b_: 2xy3 B: [207433]
        automated match to d2bazc_
        complexed with dup, mg
      3. 1560924Domain d2xy3c_: 2xy3 C: [207434]
        automated match to d2bazc_
        complexed with dup, mg
      4. 1560925Domain d2xy3d_: 2xy3 D: [207435]
        automated match to d2bazc_
        complexed with dup, mg
      5. 1560926Domain d2xy3e_: 2xy3 E: [207436]
        automated match to d2bazc_
        complexed with dup, mg
      6. 1560927Domain d2xy3f_: 2xy3 F: [207437]
        automated match to d2bazc_
        complexed with dup, mg
    6. Domains for 2y1t:
      1. 1560865Domain d2y1ta_: 2y1t A: [207451]
        automated match to d2bazc_
        complexed with dud
      2. 1560866Domain d2y1tb_: 2y1t B: [207452]
        automated match to d2bazc_
        complexed with dud
      3. 1560867Domain d2y1tc_: 2y1t C: [207453]
        automated match to d2bazc_
        complexed with dud
      4. 1560868Domain d2y1td_: 2y1t D: [207454]
        automated match to d2bazc_
        complexed with dud
      5. 1560869Domain d2y1te_: 2y1t E: [207455]
        automated match to d2bazc_
        complexed with dud
      6. 1560870Domain d2y1tf_: 2y1t F: [207456]
        automated match to d2bazc_
        complexed with dud
    7. Domains for 4ao5:
      1. 1560849Domain d4ao5a_: 4ao5 A: [201464]
        automated match to d4ao5c_
        complexed with na, ump
      2. 1560850Domain d4ao5b_: 4ao5 B: [201465]
        automated match to d4ao5e_
        complexed with na, ump
      3. 1560851Domain d4ao5c_: 4ao5 C: [196733]
        automated match to d2xcea_
        complexed with na, ump
      4. 1560852Domain d4ao5d_: 4ao5 D: [196735]
        automated match to d2xcea_
        complexed with na, ump
      5. 1560853Domain d4ao5e_: 4ao5 E: [196734]
        automated match to d2xcea_
        complexed with na, ump
      6. 1560854Domain d4ao5f_: 4ao5 F: [201466]
        automated match to d4ao5c_
        complexed with na, ump
    8. Domains for 4aoo:
      1. 1560915Domain d4aooa_: 4aoo A: [219082]
        automated match to d4apza_
        complexed with dur, mg, po4, pop
      2. 1560916Domain d4aoob_: 4aoo B: [219083]
        automated match to d4apz1_
        complexed with dur, mg, po4, pop
      3. 1560917Domain d4aooc_: 4aoo C: [219084]
        automated match to d4apz1_
        complexed with dur, mg, po4, pop
      4. 1560918Domain d4aood_: 4aoo D: [219085]
        automated match to d4apz1_
        complexed with dur, mg, po4, pop
    9. Domains for 4aoz:
      1. 1560877Domain d4aoza_: 4aoz A: [219086]
        automated match to d4apza_
        complexed with act, cl, dur, mg, pop
      2. 1560878Domain d4aozb_: 4aoz B: [219087]
        automated match to d4apza_
        complexed with act, cl, dur, mg, pop
      3. 1560879Domain d4aozc_: 4aoz C: [219088]
        automated match to d4apza_
        complexed with act, cl, dur, mg, pop
    10. Domains for 4apz:
      1. 1560880Domain d4apz1_: 4apz 1: [193005]
        automated match to d2xcea_
        complexed with dur, mg, po4, pop
      2. 1560881Domain d4apz2_: 4apz 2: [193012]
        automated match to d2xcea_
        complexed with dur, mg, po4, pop
      3. 1560882Domain d4apz3_: 4apz 3: [193013]
        automated match to d2xcea_
        complexed with dur, mg, po4, pop
      4. 1560883Domain d4apz4_: 4apz 4: [193008]
        automated match to d2xcea_
        complexed with dur, mg, po4, pop
      5. 1560884Domain d4apz5_: 4apz 5: [193006]
        automated match to d2xcea_
        complexed with dur, mg, po4, pop
      6. 1560885Domain d4apz6_: 4apz 6: [193015]
        automated match to d2xcea_
        complexed with dur, mg, po4, pop
      7. 1560886Domain d4apz7_: 4apz 7: [193009]
        automated match to d2xcea_
        complexed with dur, mg, po4, pop
      8. 1560887Domain d4apz8_: 4apz 8: [193007]
        automated match to d2xcea_
        complexed with dur, mg, po4, pop
      9. 1560888Domain d4apz9_: 4apz 9: [193010]
        automated match to d2xcea_
        complexed with dur, mg, po4, pop
      10. 1560889Domain d4apza_: 4apz A: [193016]
        automated match to d2xcea_
        complexed with dur, mg, po4, pop
      11. 1560890Domain d4apzb_: 4apz B: [193014]
        automated match to d2xcea_
        complexed with dur, mg, po4, pop
      12. 1560891Domain d4apzc_: 4apz C: [193017]
        automated match to d2xcea_
        complexed with dur, mg, po4, pop
      13. 1560892Domain d4apzd_: 4apz D: [201472]
        automated match to d4apz1_
        complexed with dur, mg, po4, pop
      14. 1560893Domain d4apze_: 4apz E: [201473]
        automated match to d4apz1_
        complexed with dur, mg, po4, pop
      15. 1560894Domain d4apzf_: 4apz F: [201474]
        automated match to d4apza_
        complexed with dur, mg, po4, pop
      16. 1560895Domain d4apzg_: 4apz G: [201475]
        automated match to d4apz1_
        complexed with dur, mg, po4, pop
      17. 1560896Domain d4apzh_: 4apz H: [201476]
        automated match to d4apz1_
        complexed with dur, mg, po4, pop
      18. 1560897Domain d4apzi_: 4apz I: [201477]
        automated match to d4apz1_
        complexed with dur, mg, po4, pop
      19. 1560898Domain d4apzj_: 4apz J: [201478]
        automated match to d4apz1_
        complexed with dur, mg, po4, pop
      20. 1560899Domain d4apzk_: 4apz K: [201479]
        automated match to d4apz1_
        complexed with dur, mg, po4, pop
      21. 1560900Domain d4apzl_: 4apz L: [201480]
        automated match to d4apz1_
        complexed with dur, mg, po4, pop
      22. 1560901Domain d4apzm_: 4apz M: [201481]
        automated match to d4apz1_
        complexed with dur, mg, po4, pop
      23. 1560902Domain d4apzn_: 4apz N: [201482]
        automated match to d4apz1_
        complexed with dur, mg, po4, pop
      24. 1560903Domain d4apzo_: 4apz O: [201483]
        automated match to d4apz1_
        complexed with dur, mg, po4, pop
      25. 1560904Domain d4apzp_: 4apz P: [201484]
        automated match to d4apz1_
        complexed with dur, mg, po4, pop
      26. 1560905Domain d4apzq_: 4apz Q: [201485]
        automated match to d4apza_
        complexed with dur, mg, po4, pop
      27. 1560906Domain d4apzr_: 4apz R: [201486]
        automated match to d4apz1_
        complexed with dur, mg, po4, pop
      28. 1560907Domain d4apzs_: 4apz S: [201487]
        automated match to d4apz1_
        complexed with dur, mg, po4, pop
      29. 1560908Domain d4apzt_: 4apz T: [201488]
        automated match to d4apz1_
        complexed with dur, mg, po4, pop
      30. 1560909Domain d4apzu_: 4apz U: [201489]
        automated match to d4apz1_
        complexed with dur, mg, po4, pop
      31. 1560910Domain d4apzv_: 4apz V: [201490]
        automated match to d4apz1_
        complexed with dur, mg, po4, pop
      32. 1560911Domain d4apzw_: 4apz W: [201491]
        automated match to d4apz1_
        complexed with dur, mg, po4, pop
      33. 1560912Domain d4apzx_: 4apz X: [201492]
        automated match to d4apz1_
        complexed with dur, mg, po4, pop
      34. 1560913Domain d4apzy_: 4apz Y: [201493]
        automated match to d4apz1_
        complexed with dur, mg, po4, pop
      35. 1560914Domain d4apzz_: 4apz Z: [201494]
        automated match to d4apz1_
        complexed with dur, mg, po4, pop
    11. Domains for 4b0h:
      1. 1560846Domain d4b0ha_: 4b0h A: [219244]
        automated match to d4apza_
        complexed with cl, dur, mg, pg4, pop
      2. 1560847Domain d4b0hb_: 4b0h B: [219245]
        automated match to d4apza_
        complexed with cl, dur, mg, pg4, pop
      3. 1560848Domain d4b0hc_: 4b0h C: [219246]
        automated match to d4apza_
        complexed with cl, dur, mg, pg4, pop
  2. 1560928Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [189530] (3 PDB entries)
    1. Domains for 3f4f:
      1. 1560932Domain d3f4fa_: 3f4f A: [209790]
        automated match to d1sixa_
        complexed with edo, na, peg, ump
      2. 1560933Domain d3f4fb_: 3f4f B: [209791]
        automated match to d1sixa_
        complexed with edo, na, peg, ump
      3. 1560934Domain d3f4fc_: 3f4f C: [209792]
        automated match to d1sixa_
        complexed with edo, na, peg, ump
    2. Domains for 3hhq:
      1. 1560935Domain d3hhqa_: 3hhq A: [211040]
        automated match to d1sixa_
        complexed with cl, edo, gol, na, peg, so4
      2. 1560936Domain d3hhqb_: 3hhq B: [211041]
        automated match to d1sixa_
        complexed with cl, edo, gol, na, peg, so4
      3. 1560937Domain d3hhqc_: 3hhq C: [211042]
        automated match to d1sixa_
        complexed with cl, edo, gol, na, peg, so4
      4. 1560938Domain d3hhqd_: 3hhq D: [211043]
        automated match to d1sixa_
        complexed with cl, edo, gol, na, peg, so4
      5. 1560939Domain d3hhqe_: 3hhq E: [211044]
        automated match to d1sixa_
        complexed with cl, edo, gol, na, peg, so4
      6. 1560940Domain d3hhqf_: 3hhq F: [211045]
        automated match to d1sixa_
        complexed with cl, edo, gol, na, peg, so4
      7. 1560941Domain d3hhqg_: 3hhq G: [211046]
        automated match to d1sixa_
        complexed with cl, edo, gol, na, peg, so4
      8. 1560942Domain d3hhqh_: 3hhq H: [211047]
        automated match to d1sixa_
        complexed with cl, edo, gol, na, peg, so4
      9. 1560943Domain d3hhqi_: 3hhq I: [211048]
        automated match to d1sixa_
        complexed with cl, edo, gol, na, peg, so4
      10. 1560944Domain d3hhqj_: 3hhq J: [211049]
        automated match to d1sixa_
        complexed with cl, edo, gol, na, peg, so4
      11. 1560945Domain d3hhqk_: 3hhq K: [211050]
        automated match to d1sixa_
        complexed with cl, edo, gol, na, peg, so4
      12. 1560946Domain d3hhql_: 3hhq L: [211051]
        automated match to d1sixa_
        complexed with cl, edo, gol, na, peg, so4
      13. 1560947Domain d3hhqm_: 3hhq M: [211052]
        automated match to d1sixa_
        complexed with cl, edo, gol, na, peg, so4
      14. 1560948Domain d3hhqn_: 3hhq N: [211053]
        automated match to d1sixa_
        complexed with cl, edo, gol, na, peg, so4
      15. 1560949Domain d3hhqo_: 3hhq O: [211054]
        automated match to d1sixa_
        complexed with cl, edo, gol, na, peg, so4
      16. 1560950Domain d3hhqp_: 3hhq P: [211055]
        automated match to d1sixa_
        complexed with cl, edo, gol, na, peg, so4
      17. 1560951Domain d3hhqq_: 3hhq Q: [211056]
        automated match to d1sixa_
        complexed with cl, edo, gol, na, peg, so4
      18. 1560952Domain d3hhqr_: 3hhq R: [211057]
        automated match to d1sixa_
        complexed with cl, edo, gol, na, peg, so4
      19. 1560953Domain d3hhqs_: 3hhq S: [211058]
        automated match to d1sixa_
        complexed with cl, edo, gol, na, peg, so4
      20. 1560954Domain d3hhqt_: 3hhq T: [211059]
        automated match to d1sixa_
        complexed with cl, edo, gol, na, peg, so4
      21. 1560955Domain d3hhqu_: 3hhq U: [211060]
        automated match to d1sixa_
        complexed with cl, edo, gol, na, peg, so4
      22. 1560956Domain d3hhqv_: 3hhq V: [211061]
        automated match to d1sixa_
        complexed with cl, edo, gol, na, peg, so4
      23. 1560957Domain d3hhqw_: 3hhq W: [211062]
        automated match to d1sixa_
        complexed with cl, edo, gol, na, peg, so4
      24. 1560958Domain d3hhqx_: 3hhq X: [211063]
        automated match to d1sixa_
        complexed with cl, edo, gol, na, peg, so4
    3. Domains for 3p48:
      1. 1560929Domain d3p48a_: 3p48 A: [183494]
        automated match to d1q5hb_
        complexed with dup, mg
      2. 1560930Domain d3p48b_: 3p48 B: [183495]
        automated match to d1q5hb_
        complexed with dup, mg
      3. 1560931Domain d3p48c_: 3p48 C: [183496]
        automated match to d1q5hb_
        complexed with dup, mg
  3. 1560959Brucella melitensis [TaxId:359391] [255959] (2 PDB entries)
    1. Domains for 3mbq:
      1. 1560961Domain d3mbqa_: 3mbq A: [247633]
        automated match to d1sixa_
        complexed with edo, gol, so4
      2. 1560962Domain d3mbqb_: 3mbq B: [247634]
        automated match to d1sixa_
        complexed with edo, gol, so4
      3. 1560963Domain d3mbqc_: 3mbq C: [247635]
        automated match to d1sixa_
        complexed with edo, gol, so4
    2. Domain for 3mdx:
  4. 1560964Entamoeba histolytica [TaxId:294381] [225850] (1 PDB entry)
  5. 1560966Fruit fly (Drosophila melanogaster) [TaxId:7227] [225535] (1 PDB entry)
  6. 1560969Human (Homo sapiens) [TaxId:9606] [226031] (4 PDB entries)
    1. Domains for 2hqu:
      1. 1560982Domain d2hqua_: 2hqu A: [147361]
        automated match to d4apza_
        complexed with cl, dup, mg
      2. 1560983Domain d2hqub_: 2hqu B: [147362]
        automated match to d4apza_
        complexed with cl, dup, mg
      3. 1560984Domain d2hquc_: 2hqu C: [147363]
        automated match to d4apza_
        complexed with cl, dup, mg
    2. Domains for 3ara:
      1. 1560973Domain d3araa_: 3ara A: [208345]
        automated match to d4apza_
        complexed with mg, mkh
      2. 1560974Domain d3arab_: 3ara B: [208346]
        automated match to d4apza_
        complexed with mg, mkh
      3. 1560975Domain d3arac_: 3ara C: [208347]
        automated match to d4apza_
        complexed with mg, mkh
    3. Domains for 3arn:
      1. 1560970Domain d3arna_: 3arn A: [208351]
        automated match to d4apza_
        complexed with mg, msj
      2. 1560971Domain d3arnb_: 3arn B: [208352]
        automated match to d4apza_
        complexed with mg, msj
      3. 1560972Domain d3arnc_: 3arn C: [208353]
        automated match to d4apza_
        complexed with mg, msj
    4. Domains for 3ehw:
      1. 1560976Domain d3ehwa_: 3ehw A: [158154]
        automated match to d4apza_
        complexed with dup, mg
      2. 1560977Domain d3ehwb_: 3ehw B: [158155]
        automated match to d4apza_
        complexed with dup, mg
      3. 1560978Domain d3ehwc_: 3ehw C: [158156]
        automated match to d4apza_
        complexed with dup, mg
      4. 1560979Domain d3ehwx_: 3ehw X: [158157]
        automated match to d4apza_
        complexed with dup, mg
      5. 1560980Domain d3ehwy_: 3ehw Y: [158158]
        automated match to d4apza_
        complexed with dup, mg
      6. 1560981Domain d3ehwz_: 3ehw Z: [158159]
        automated match to d4apza_
        complexed with dup, mg
  7. 1560985Mason-pfizer monkey virus [TaxId:11855] [225168] (16 PDB entries)
    1. Domain for 2d4l:
    2. Domain for 2d4m:
    3. Domain for 2d4n:
    4. Domain for 3tp1:
    5. Domain for 3tpn:
    6. Domain for 3tps:
    7. Domain for 3tpw:
    8. Domain for 3tpy:
    9. Domain for 3tq3:
    10. Domain for 3tq4:
    11. Domain for 3tq5:
    12. Domain for 3trl:
    13. Domain for 3trn:
    14. Domain for 3ts6:
    15. Domain for 3tsl:
    16. Domain for 3tta:
  8. 1561002Paramecium bursaria chlorella virus il3a [TaxId:46019] [255769] (3 PDB entries)
    1. Domains for 3c2t:
      1. 1561009Domain d3c2ta_: 3c2t A: [245446]
        automated match to d3ehwa_
        complexed with dud, mg
      2. 1561010Domain d3c2tb_: 3c2t B: [245447]
        automated match to d3ehwa_
        complexed with dud, mg
    2. Domains for 3c3i:
      1. 1561003Domain d3c3ia_: 3c3i A: [245454]
        automated match to d3ehwa_
        complexed with dud, mg
      2. 1561004Domain d3c3ib_: 3c3i B: [245455]
        automated match to d3ehwa_
        complexed with dud, mg
      3. 1561005Domain d3c3ic_: 3c3i C: [245456]
        automated match to d3ehwa_
        complexed with dud, mg
      4. 1561006Domain d3c3id_: 3c3i D: [245457]
        automated match to d3ehwa_
        complexed with dud, mg
    3. Domains for 3ca9:
      1. 1561007Domain d3ca9a_: 3ca9 A: [245475]
        automated match to d1sixa_
        complexed with dud, mg
      2. 1561008Domain d3ca9b_: 3ca9 B: [245476]
        automated match to d1sixa_
        complexed with dud, mg
  9. 1561011Staphylococcus phage [TaxId:12360] [227850] (1 PDB entry)
  10. 1561018Staphylococcus phage [TaxId:53369] [256154] (7 PDB entries)
    1. Domain for 3zez:
    2. Domain for 3zf0:
    3. Domain for 3zf1:
    4. Domain for 3zf2:
    5. Domain for 3zf3:
    6. Domain for 3zf4:
    7. Domain for 3zf6:
  11. 1561026Thale cress (Arabidopsis thaliana) [TaxId:3702] [255543] (2 PDB entries)
    1. Domains for 2p9o:
      1. 1561027Domain d2p9oa_: 2p9o A: [243456]
        automated match to d3so2a_
        complexed with mg
      2. 1561028Domain d2p9ob_: 2p9o B: [243457]
        automated match to d3so2a_
        complexed with mg
      3. 1561029Domain d2p9oc_: 2p9o C: [243458]
        automated match to d3so2a_
        complexed with mg
    2. Domains for 2pc5:
      1. 1561030Domain d2pc5a_: 2pc5 A: [243469]
        automated match to d3so2a_
        complexed with mg
      2. 1561031Domain d2pc5b_: 2pc5 B: [243470]
        automated match to d3so2a_
        complexed with mg
      3. 1561032Domain d2pc5c_: 2pc5 C: [243471]
        automated match to d3so2a_
        complexed with mg

More info for Protein automated matches from b.85.4.0: automated matches

Timeline for Protein automated matches from b.85.4.0: automated matches: