Lineage for Protein: automated matches

  1. Root: SCOPe 2.03
  2. 1287432Class b: All beta proteins [48724] (174 folds)
  3. 1332308Fold b.85: beta-clip [51268] (7 superfamilies)
    double-stranded ribbon sharply bent in two places; the ribbon ends form incomplete barrel; jelly-roll
  4. 1332444Superfamily b.85.4: dUTPase-like [51283] (2 families) (S)
    forms tight trimer through an additional beta-sheet in each subunit
    subunit beta-sheets are orthogonally packed around the three-fold axis
  5. 1332637Family b.85.4.0: automated matches [191644] (1 protein)
    not a true family
  6. 1332638Protein automated matches [191182] (7 species)
    not a true protein

Species:

  1. 1332639Bacillus subtilis [TaxId:1423] [189439] (11 PDB entries)
    1. Domains for 2baz:
      1. 1332713Domain d2baza_: 2baz A: [197782]
        automated match to d2bazc_
      2. 1332714Domain d2bazb_: 2baz B: [197783]
        automated match to d2bazc_
      3. 1332715Domain d2bazc_: 2baz C: [193858]
        automated match to d2xcea_
    2. Domains for 2xcd:
      1. 1332665Domain d2xcda_: 2xcd A: [170020]
        automated match to d1sixa_
        complexed with cl, gol, mg, na
      2. 1332666Domain d2xcdb_: 2xcd B: [170021]
        automated match to d1sixa_
        complexed with cl, gol, mg, na
      3. 1332667Domain d2xcdc_: 2xcd C: [170022]
        automated match to d1sixa_
        complexed with cl, gol, mg, na
      4. 1332668Domain d2xcdd_: 2xcd D: [170023]
        automated match to d1sixa_
        complexed with cl, gol, mg, na
      5. 1332669Domain d2xcde_: 2xcd E: [170024]
        automated match to d1sixa_
        complexed with cl, gol, mg, na
      6. 1332670Domain d2xcdf_: 2xcd F: [170025]
        automated match to d1sixa_
        complexed with cl, gol, mg, na
    3. Domains for 2xce:
      1. 1332653Domain d2xcea_: 2xce A: [170026]
        automated match to d1sixa_
        complexed with ca, dup, gol
      2. 1332654Domain d2xceb_: 2xce B: [170027]
        automated match to d1sixa_
        complexed with ca, dup, gol
      3. 1332655Domain d2xcec_: 2xce C: [170028]
        automated match to d1sixa_
        complexed with ca, dup, gol
      4. 1332656Domain d2xced_: 2xce D: [170029]
        automated match to d1sixa_
        complexed with ca, dup, gol
      5. 1332657Domain d2xcee_: 2xce E: [170030]
        automated match to d1sixa_
        complexed with ca, dup, gol
      6. 1332658Domain d2xcef_: 2xce F: [170031]
        automated match to d1sixa_
        complexed with ca, dup, gol
    4. Domains for 2xx6:
      1. 1332649Domain d2xx6a_: 2xx6 A: [207389]
        automated match to d2bazc_
      2. 1332650Domain d2xx6b_: 2xx6 B: [207390]
        automated match to d2bazc_
      3. 1332651Domain d2xx6c_: 2xx6 C: [207391]
        automated match to d2bazc_
      4. 1332652Domain d2xx6d_: 2xx6 D: [207392]
        automated match to d2bazc_
    5. Domains for 2xy3:
      1. 1332716Domain d2xy3a_: 2xy3 A: [207432]
        automated match to d2bazc_
        complexed with dup, mg
      2. 1332717Domain d2xy3b_: 2xy3 B: [207433]
        automated match to d2bazc_
        complexed with dup, mg
      3. 1332718Domain d2xy3c_: 2xy3 C: [207434]
        automated match to d2bazc_
        complexed with dup, mg
      4. 1332719Domain d2xy3d_: 2xy3 D: [207435]
        automated match to d2bazc_
        complexed with dup, mg
      5. 1332720Domain d2xy3e_: 2xy3 E: [207436]
        automated match to d2bazc_
        complexed with dup, mg
      6. 1332721Domain d2xy3f_: 2xy3 F: [207437]
        automated match to d2bazc_
        complexed with dup, mg
    6. Domains for 2y1t:
      1. 1332659Domain d2y1ta_: 2y1t A: [207451]
        automated match to d2bazc_
        complexed with dud
      2. 1332660Domain d2y1tb_: 2y1t B: [207452]
        automated match to d2bazc_
        complexed with dud
      3. 1332661Domain d2y1tc_: 2y1t C: [207453]
        automated match to d2bazc_
        complexed with dud
      4. 1332662Domain d2y1td_: 2y1t D: [207454]
        automated match to d2bazc_
        complexed with dud
      5. 1332663Domain d2y1te_: 2y1t E: [207455]
        automated match to d2bazc_
        complexed with dud
      6. 1332664Domain d2y1tf_: 2y1t F: [207456]
        automated match to d2bazc_
        complexed with dud
    7. Domains for 4ao5:
      1. 1332643Domain d4ao5a_: 4ao5 A: [201464]
        automated match to d4ao5c_
        complexed with na, ump
      2. 1332644Domain d4ao5b_: 4ao5 B: [201465]
        automated match to d4ao5e_
        complexed with na, ump
      3. 1332645Domain d4ao5c_: 4ao5 C: [196733]
        automated match to d2xcea_
        complexed with na, ump
      4. 1332646Domain d4ao5d_: 4ao5 D: [196735]
        automated match to d2xcea_
        complexed with na, ump
      5. 1332647Domain d4ao5e_: 4ao5 E: [196734]
        automated match to d2xcea_
        complexed with na, ump
      6. 1332648Domain d4ao5f_: 4ao5 F: [201466]
        automated match to d4ao5c_
        complexed with na, ump
    8. Domains for 4aoo:
      1. 1332709Domain d4aooa_: 4aoo A: [219082]
        automated match to d4apza_
        complexed with dur, mg, po4, pop
      2. 1332710Domain d4aoob_: 4aoo B: [219083]
        automated match to d4apz1_
        complexed with dur, mg, po4, pop
      3. 1332711Domain d4aooc_: 4aoo C: [219084]
        automated match to d4apz1_
        complexed with dur, mg, po4, pop
      4. 1332712Domain d4aood_: 4aoo D: [219085]
        automated match to d4apz1_
        complexed with dur, mg, po4, pop
    9. Domains for 4aoz:
      1. 1332671Domain d4aoza_: 4aoz A: [219086]
        automated match to d4apza_
        complexed with act, cl, dur, mg, pop
      2. 1332672Domain d4aozb_: 4aoz B: [219087]
        automated match to d4apza_
        complexed with act, cl, dur, mg, pop
      3. 1332673Domain d4aozc_: 4aoz C: [219088]
        automated match to d4apza_
        complexed with act, cl, dur, mg, pop
    10. Domains for 4apz:
      1. 1332674Domain d4apz1_: 4apz 1: [193005]
        automated match to d2xcea_
        complexed with dur, mg, po4, pop
      2. 1332675Domain d4apz2_: 4apz 2: [193012]
        automated match to d2xcea_
        complexed with dur, mg, po4, pop
      3. 1332676Domain d4apz3_: 4apz 3: [193013]
        automated match to d2xcea_
        complexed with dur, mg, po4, pop
      4. 1332677Domain d4apz4_: 4apz 4: [193008]
        automated match to d2xcea_
        complexed with dur, mg, po4, pop
      5. 1332678Domain d4apz5_: 4apz 5: [193006]
        automated match to d2xcea_
        complexed with dur, mg, po4, pop
      6. 1332679Domain d4apz6_: 4apz 6: [193015]
        automated match to d2xcea_
        complexed with dur, mg, po4, pop
      7. 1332680Domain d4apz7_: 4apz 7: [193009]
        automated match to d2xcea_
        complexed with dur, mg, po4, pop
      8. 1332681Domain d4apz8_: 4apz 8: [193007]
        automated match to d2xcea_
        complexed with dur, mg, po4, pop
      9. 1332682Domain d4apz9_: 4apz 9: [193010]
        automated match to d2xcea_
        complexed with dur, mg, po4, pop
      10. 1332683Domain d4apza_: 4apz A: [193016]
        automated match to d2xcea_
        complexed with dur, mg, po4, pop
      11. 1332684Domain d4apzb_: 4apz B: [193014]
        automated match to d2xcea_
        complexed with dur, mg, po4, pop
      12. 1332685Domain d4apzc_: 4apz C: [193017]
        automated match to d2xcea_
        complexed with dur, mg, po4, pop
      13. 1332686Domain d4apzd_: 4apz D: [201472]
        automated match to d4apz1_
        complexed with dur, mg, po4, pop
      14. 1332687Domain d4apze_: 4apz E: [201473]
        automated match to d4apz1_
        complexed with dur, mg, po4, pop
      15. 1332688Domain d4apzf_: 4apz F: [201474]
        automated match to d4apza_
        complexed with dur, mg, po4, pop
      16. 1332689Domain d4apzg_: 4apz G: [201475]
        automated match to d4apz1_
        complexed with dur, mg, po4, pop
      17. 1332690Domain d4apzh_: 4apz H: [201476]
        automated match to d4apz1_
        complexed with dur, mg, po4, pop
      18. 1332691Domain d4apzi_: 4apz I: [201477]
        automated match to d4apz1_
        complexed with dur, mg, po4, pop
      19. 1332692Domain d4apzj_: 4apz J: [201478]
        automated match to d4apz1_
        complexed with dur, mg, po4, pop
      20. 1332693Domain d4apzk_: 4apz K: [201479]
        automated match to d4apz1_
        complexed with dur, mg, po4, pop
      21. 1332694Domain d4apzl_: 4apz L: [201480]
        automated match to d4apz1_
        complexed with dur, mg, po4, pop
      22. 1332695Domain d4apzm_: 4apz M: [201481]
        automated match to d4apz1_
        complexed with dur, mg, po4, pop
      23. 1332696Domain d4apzn_: 4apz N: [201482]
        automated match to d4apz1_
        complexed with dur, mg, po4, pop
      24. 1332697Domain d4apzo_: 4apz O: [201483]
        automated match to d4apz1_
        complexed with dur, mg, po4, pop
      25. 1332698Domain d4apzp_: 4apz P: [201484]
        automated match to d4apz1_
        complexed with dur, mg, po4, pop
      26. 1332699Domain d4apzq_: 4apz Q: [201485]
        automated match to d4apza_
        complexed with dur, mg, po4, pop
      27. 1332700Domain d4apzr_: 4apz R: [201486]
        automated match to d4apz1_
        complexed with dur, mg, po4, pop
      28. 1332701Domain d4apzs_: 4apz S: [201487]
        automated match to d4apz1_
        complexed with dur, mg, po4, pop
      29. 1332702Domain d4apzt_: 4apz T: [201488]
        automated match to d4apz1_
        complexed with dur, mg, po4, pop
      30. 1332703Domain d4apzu_: 4apz U: [201489]
        automated match to d4apz1_
        complexed with dur, mg, po4, pop
      31. 1332704Domain d4apzv_: 4apz V: [201490]
        automated match to d4apz1_
        complexed with dur, mg, po4, pop
      32. 1332705Domain d4apzw_: 4apz W: [201491]
        automated match to d4apz1_
        complexed with dur, mg, po4, pop
      33. 1332706Domain d4apzx_: 4apz X: [201492]
        automated match to d4apz1_
        complexed with dur, mg, po4, pop
      34. 1332707Domain d4apzy_: 4apz Y: [201493]
        automated match to d4apz1_
        complexed with dur, mg, po4, pop
      35. 1332708Domain d4apzz_: 4apz Z: [201494]
        automated match to d4apz1_
        complexed with dur, mg, po4, pop
    11. Domains for 4b0h:
      1. 1332640Domain d4b0ha_: 4b0h A: [219244]
        automated match to d4apza_
        complexed with cl, dur, mg, pg4, pop
      2. 1332641Domain d4b0hb_: 4b0h B: [219245]
        automated match to d4apza_
        complexed with cl, dur, mg, pg4, pop
      3. 1332642Domain d4b0hc_: 4b0h C: [219246]
        automated match to d4apza_
        complexed with cl, dur, mg, pg4, pop
  2. 1332722Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [189530] (3 PDB entries)
    1. Domains for 3f4f:
      1. 1332726Domain d3f4fa_: 3f4f A: [209790]
        automated match to d1sixa_
        complexed with edo, na, peg, ump
      2. 1332727Domain d3f4fb_: 3f4f B: [209791]
        automated match to d1sixa_
        complexed with edo, na, peg, ump
      3. 1332728Domain d3f4fc_: 3f4f C: [209792]
        automated match to d1sixa_
        complexed with edo, na, peg, ump
    2. Domains for 3hhq:
      1. 1332729Domain d3hhqa_: 3hhq A: [211040]
        automated match to d1sixa_
        complexed with cl, edo, gol, na, peg, so4
      2. 1332730Domain d3hhqb_: 3hhq B: [211041]
        automated match to d1sixa_
        complexed with cl, edo, gol, na, peg, so4
      3. 1332731Domain d3hhqc_: 3hhq C: [211042]
        automated match to d1sixa_
        complexed with cl, edo, gol, na, peg, so4
      4. 1332732Domain d3hhqd_: 3hhq D: [211043]
        automated match to d1sixa_
        complexed with cl, edo, gol, na, peg, so4
      5. 1332733Domain d3hhqe_: 3hhq E: [211044]
        automated match to d1sixa_
        complexed with cl, edo, gol, na, peg, so4
      6. 1332734Domain d3hhqf_: 3hhq F: [211045]
        automated match to d1sixa_
        complexed with cl, edo, gol, na, peg, so4
      7. 1332735Domain d3hhqg_: 3hhq G: [211046]
        automated match to d1sixa_
        complexed with cl, edo, gol, na, peg, so4
      8. 1332736Domain d3hhqh_: 3hhq H: [211047]
        automated match to d1sixa_
        complexed with cl, edo, gol, na, peg, so4
      9. 1332737Domain d3hhqi_: 3hhq I: [211048]
        automated match to d1sixa_
        complexed with cl, edo, gol, na, peg, so4
      10. 1332738Domain d3hhqj_: 3hhq J: [211049]
        automated match to d1sixa_
        complexed with cl, edo, gol, na, peg, so4
      11. 1332739Domain d3hhqk_: 3hhq K: [211050]
        automated match to d1sixa_
        complexed with cl, edo, gol, na, peg, so4
      12. 1332740Domain d3hhql_: 3hhq L: [211051]
        automated match to d1sixa_
        complexed with cl, edo, gol, na, peg, so4
      13. 1332741Domain d3hhqm_: 3hhq M: [211052]
        automated match to d1sixa_
        complexed with cl, edo, gol, na, peg, so4
      14. 1332742Domain d3hhqn_: 3hhq N: [211053]
        automated match to d1sixa_
        complexed with cl, edo, gol, na, peg, so4
      15. 1332743Domain d3hhqo_: 3hhq O: [211054]
        automated match to d1sixa_
        complexed with cl, edo, gol, na, peg, so4
      16. 1332744Domain d3hhqp_: 3hhq P: [211055]
        automated match to d1sixa_
        complexed with cl, edo, gol, na, peg, so4
      17. 1332745Domain d3hhqq_: 3hhq Q: [211056]
        automated match to d1sixa_
        complexed with cl, edo, gol, na, peg, so4
      18. 1332746Domain d3hhqr_: 3hhq R: [211057]
        automated match to d1sixa_
        complexed with cl, edo, gol, na, peg, so4
      19. 1332747Domain d3hhqs_: 3hhq S: [211058]
        automated match to d1sixa_
        complexed with cl, edo, gol, na, peg, so4
      20. 1332748Domain d3hhqt_: 3hhq T: [211059]
        automated match to d1sixa_
        complexed with cl, edo, gol, na, peg, so4
      21. 1332749Domain d3hhqu_: 3hhq U: [211060]
        automated match to d1sixa_
        complexed with cl, edo, gol, na, peg, so4
      22. 1332750Domain d3hhqv_: 3hhq V: [211061]
        automated match to d1sixa_
        complexed with cl, edo, gol, na, peg, so4
      23. 1332751Domain d3hhqw_: 3hhq W: [211062]
        automated match to d1sixa_
        complexed with cl, edo, gol, na, peg, so4
      24. 1332752Domain d3hhqx_: 3hhq X: [211063]
        automated match to d1sixa_
        complexed with cl, edo, gol, na, peg, so4
    3. Domains for 3p48:
      1. 1332723Domain d3p48a_: 3p48 A: [183494]
        automated match to d1q5hb_
        complexed with dup, mg
      2. 1332724Domain d3p48b_: 3p48 B: [183495]
        automated match to d1q5hb_
        complexed with dup, mg
      3. 1332725Domain d3p48c_: 3p48 C: [183496]
        automated match to d1q5hb_
        complexed with dup, mg
  3. 1332753Entamoeba histolytica [TaxId:294381] [225850] (1 PDB entry)
  4. 1332755Fruit fly (Drosophila melanogaster) [TaxId:7227] [225535] (1 PDB entry)
  5. 1332758Human (Homo sapiens) [TaxId:9606] [226031] (4 PDB entries)
    1. Domains for 2hqu:
      1. 1332771Domain d2hqua_: 2hqu A: [147361]
        automated match to d4apza_
        complexed with cl, dup, mg
      2. 1332772Domain d2hqub_: 2hqu B: [147362]
        automated match to d4apza_
        complexed with cl, dup, mg
      3. 1332773Domain d2hquc_: 2hqu C: [147363]
        automated match to d4apza_
        complexed with cl, dup, mg
    2. Domains for 3ara:
      1. 1332762Domain d3araa_: 3ara A: [208345]
        automated match to d4apza_
        complexed with mg, mkh
      2. 1332763Domain d3arab_: 3ara B: [208346]
        automated match to d4apza_
        complexed with mg, mkh
      3. 1332764Domain d3arac_: 3ara C: [208347]
        automated match to d4apza_
        complexed with mg, mkh
    3. Domains for 3arn:
      1. 1332759Domain d3arna_: 3arn A: [208351]
        automated match to d4apza_
        complexed with mg, msj
      2. 1332760Domain d3arnb_: 3arn B: [208352]
        automated match to d4apza_
        complexed with mg, msj
      3. 1332761Domain d3arnc_: 3arn C: [208353]
        automated match to d4apza_
        complexed with mg, msj
    4. Domains for 3ehw:
      1. 1332765Domain d3ehwa_: 3ehw A: [158154]
        automated match to d4apza_
        complexed with dup, mg
      2. 1332766Domain d3ehwb_: 3ehw B: [158155]
        automated match to d4apza_
        complexed with dup, mg
      3. 1332767Domain d3ehwc_: 3ehw C: [158156]
        automated match to d4apza_
        complexed with dup, mg
      4. 1332768Domain d3ehwx_: 3ehw X: [158157]
        automated match to d4apza_
        complexed with dup, mg
      5. 1332769Domain d3ehwy_: 3ehw Y: [158158]
        automated match to d4apza_
        complexed with dup, mg
      6. 1332770Domain d3ehwz_: 3ehw Z: [158159]
        automated match to d4apza_
        complexed with dup, mg
  6. 1332774Mason-pfizer monkey virus [TaxId:11855] [225168] (16 PDB entries)
    1. Domain for 2d4l:
    2. Domain for 2d4m:
    3. Domain for 2d4n:
    4. Domain for 3tp1:
    5. Domain for 3tpn:
    6. Domain for 3tps:
    7. Domain for 3tpw:
    8. Domain for 3tpy:
    9. Domain for 3tq3:
    10. Domain for 3tq4:
    11. Domain for 3tq5:
    12. Domain for 3trl:
    13. Domain for 3trn:
    14. Domain for 3ts6:
    15. Domain for 3tsl:
    16. Domain for 3tta:
  7. 1332791Staphylococcus phage [TaxId:12360] [227850] (1 PDB entry)

More info for Protein automated matches from b.85.4.0: automated matches

Timeline for Protein automated matches from b.85.4.0: automated matches: